Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0590
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    29   3.9  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    29   3.9  
At1g13940.1 68414.m01637 expressed protein                             29   3.9  

>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 696 DFIGGSAPGT-----KKKEKNGYSHKNVFCQFKIRFTIKRRVILVNA 571
           DF GG +P         + +NGYS+    C +K+  T+   V+++ A
Sbjct: 280 DFSGGDSPVKCATFPSLRFRNGYSYNTQGCHYKVAVTLSGEVLIIVA 326


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 113 KLHNLKTGGNWKFRNIKKRKTM--WSHRVECTTRTE 12
           +L  LK GGNW + N  K +      H+ E T R E
Sbjct: 191 ELGGLKNGGNWNYSNQSKEQVEAGMLHKYEATMRRE 226


>At1g13940.1 68414.m01637 expressed protein
          Length = 1005

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 210 WKLKDYKCSNDSLDRPSTANCESDGHA 130
           WK+  +  +N   DRPS +  E +GH+
Sbjct: 126 WKIPSFPLANSVYDRPSMSVVEDNGHS 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,058
Number of Sequences: 28952
Number of extensions: 258855
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)