Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0589
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    83   4e-17
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    29   0.48 
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   1.1  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   1.5  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   2.0  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    25   7.9  

>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 56/126 (44%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
 Frame = +1

Query: 229 ETETKSKHRFVEAQASSTAVPLNY--YTVFKTVQQGIPKDS---IIVSEGANTMDIGRGL 393
           ET +K++ + +E++ SS  + +NY  Y V + +Q    K       VSEGANTMD GR L
Sbjct: 345 ETRSKNEKKALESRKSSIPLQMNYALYVVNEELQSLSLKSKRNITWVSEGANTMDRGRQL 404

Query: 394 LLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKE-TLLLGFSGMEIET 570
           L   HPR RLDAGT  TMGVG G+AIA+A     +A  +   V+ E     GFS ME+ET
Sbjct: 405 LEVTHPRGRLDAGTMSTMGVGMGYAIASA-----FAHSSDKIVVVEGDSAFGFSAMELET 459

Query: 571 MFRYKL 588
             R +L
Sbjct: 460 AIRNQL 465



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = +2

Query: 8   ARMNWMLHFGQPPRYAPDVKIIQVEISPEEF-HNSKKSELAVHSDIRPFTEALVKRLSER 184
           AR+NW+  +G PP+++P+ K IQ++ + E   +N+   +LA+ +D+    + L K +   
Sbjct: 270 ARLNWIFQYGLPPKWSPNAKFIQIDTNAETLGNNAADLDLAIWADVGLTIDCLFKLVQTW 329

Query: 185 KFSL 196
           K+S+
Sbjct: 330 KYSV 333


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 337 KDSIIVSEGANTMDIGRGLLLN-NHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNV 513
           KD + ++ G     +          P   + +G  GTMG G   AI A++     AP ++
Sbjct: 486 KDKVTITTGVGAHQMWAATFYRWTKPSSLVTSGGLGTMGFGLPAAIGASV----AAPKDI 541

Query: 514 SFVLKETLLLGFSGMEIETMFRYKLP 591
              +        +GME+ T+ ++ +P
Sbjct: 542 VIDIDGDASFSMTGMELATVRQFDIP 567


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +2

Query: 116 SELAVHSDIRPFTEALVKRLSER 184
           S+++V SD+ PFT  L+K++S+R
Sbjct: 233 SDVSVPSDVLPFTIKLLKKISQR 255


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 35  GQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQN 208
           G+PP +  + KI    IS      S  + L  HS + P  E    + S   +SL PQ+
Sbjct: 235 GRPPLHRSEQKIANTPISNNVTVESTGTNLHTHSQLNPENE----QSSSEFYSLNPQS 288


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 268 EPLQIGVCFLFLFQSLPPTVVLRLQ 194
           EP+Q G+C L LF+++P + V  LQ
Sbjct: 324 EPVQFGICRLPLFKNIPLSEVDSLQ 348


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 634 FDKEVMGRYSIWAAMLLSV 690
           F   V GRYS+W+A+ LSV
Sbjct: 271 FSDWVGGRYSVWSAIGLSV 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,224
Number of Sequences: 5004
Number of extensions: 61147
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)