Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0589
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 61 7e-10
04_03_0739 + 19180048-19182039 32 0.38
04_03_0737 - 19152942-19154930 31 1.2
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 30 2.0
12_01_0413 + 3286897-3286990,3287269-3287432 29 2.7
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 29 2.7
02_02_0106 + 6814391-6817007,6817086-6817462 28 6.2
12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618 28 8.2
11_01_0808 - 7183656-7183671,7184062-7184324,7184768-7184857,718... 28 8.2
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/81 (32%), Positives = 49/81 (60%)
Frame = +2
Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
AR+NW+LHFG+PP+++ DVK I V++ EE +K + + D + E + + + ++
Sbjct: 279 ARLNWLLHFGEPPKWSKDVKFILVDVCEEEI-ELRKPHVGIVGDAKRVVELINREIKDQP 337
Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
F L P ++ W + + +K + N
Sbjct: 338 FCLAP-SHPWVEAITKKARDN 357
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Frame = +1
Query: 259 VEAQASSTAVPLNYYTVFKTVQQGIPKDS----IIVSEGANTMDIGRGLLLNNHPRHRLD 426
+EAQ + VP N+ T + ++ I + ++VSEGANTMD+GR +L+ N PR RLD
Sbjct: 361 MEAQLAKDVVPFNFLTPLRIIRDAILAEGNPAPVVVSEGANTMDVGRAVLVQNEPRTRLD 420
Query: 427 A 429
A
Sbjct: 421 A 421
>04_03_0739 + 19180048-19182039
Length = 663
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 35 GQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQN-- 208
G+ +A KI+ V+I P E +K+ +++ +D++ + + L E+ + +N
Sbjct: 368 GKVEAFASRAKIVHVDIDPSELGKNKQPHVSICADVKLALQGMNAMLEEQSAAAARKNLD 427
Query: 209 NSWWQGLKQKQKANTDL 259
S W+ +K+K L
Sbjct: 428 FSAWRSELEKKKVEFPL 444
>04_03_0737 - 19152942-19154930
Length = 662
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +2
Query: 35 GQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQNNS 214
G+ +A KI+ V+I P E +K+ +++ +D++ + + L +++ + + S
Sbjct: 372 GKVEAFASRAKIVHVDIDPSELGKNKQPHVSICADVKLALQGMNATLEQQQ--RKNLDFS 429
Query: 215 WWQGLKQKQKANTDL 259
W+ +K+KA L
Sbjct: 430 AWRSELEKKKAEFPL 444
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +1
Query: 151 YRSSCKKVVRKEVLIATSKQQLVAGTETETKSKHRFVEAQASSTAVPLNYYTVFKTVQQG 330
++ S + V K V+ + A +S HRF+EA A+ P N++ V + +++
Sbjct: 154 FKESIQGDVPKSVITDGGDAVVAAVKAVFPESNHRFLEAHAARRFTPANFHLVREEIEK- 212
Query: 331 IPKDSIIVSEGANTM 375
D +V + TM
Sbjct: 213 --MDGFVVVDTLPTM 225
>12_01_0413 + 3286897-3286990,3287269-3287432
Length = 85
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -3
Query: 507 TRCIVSAPHC---CCNSEARSYPHSAKCTSI 424
T C V PHC CN++ ++ S KC S+
Sbjct: 35 TECTVETPHCTMDSCNAKCKAEATSRKCNSL 65
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 596 ITGNLYRNIVSISMPEKPKSRVSFNTNDTLP 504
++ L+ +VS+ + KP SR S NTN TLP
Sbjct: 6 LSHRLFSALVSLLLHGKPISRSSSNTNTTLP 36
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 372 HGYWPRFIAQQSSETQARCWYIWHYGGRTWLRYCSSNVVPRLCTW*RVICVEG 530
H +P+ + Q S E Q H+G L SSN C W + C +G
Sbjct: 21 HKSYPQLVNQSSDEHQILLEIKRHWGSSPVLGRWSSNSAAH-CNWGGITCTDG 72
>12_01_0690 - 5903578-5904567,5905269-5905468,5905562-5906618
Length = 748
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 695 WC---TLSNIAAQIEYLPITSLSNPLXIPLLFTMIIITGNLYRNIVSISMPE 549
WC S Q+ LP SLS P+ L + T L+RN +S S+PE
Sbjct: 234 WCDHIAKSTPKLQVLSLPWCSLSGPICASLSAMQSLNTIELHRNHLSGSIPE 285
>11_01_0808 -
7183656-7183671,7184062-7184324,7184768-7184857,
7184958-7185191
Length = 200
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 366 EYHGYWPRFIAQQSSETQAR-----CWYIWHYGGRTWLRYCSSNVVPRLCTW*RVIC 521
+ H W + +A ++S+ + CW IW+ R +C S + + RVIC
Sbjct: 71 DLHKTWTKVVAMRNSQERNNRLENLCWRIWNVARRKKQCHCISPKLRAVARSYRVIC 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,896
Number of Sequences: 37544
Number of extensions: 402771
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -