Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0589
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)          61   1e-09
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_27564| Best HMM Match : IPT (HMM E-Value=8.6)                       28   8.4  
SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)              28   8.4  

>SB_59568| Best HMM Match : TPP_enzyme_C (HMM E-Value=3.6e-34)
          Length = 521

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 37/100 (37%), Positives = 55/100 (55%)
 Frame = +1

Query: 292 LNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAI 471
           LN   +   V+Q + KDS+IV++G + +     +L    P   LD G FGT+GVG GFA+
Sbjct: 334 LNPMKLLNIVEQVMSKDSVIVADGGDFVGTAAYILRPRAPLSWLDPGAFGTLGVGGGFAL 393

Query: 472 AAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKLP 591
            A + CR   P +  +V+     LG+S  E +T  R+K P
Sbjct: 394 GAKL-CR---PDSDVWVMYGDGSLGYSIAEFDTFVRHKTP 429


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 288  TTELLHCFQNSSTRHSKRFNHCQRRSE 368
            TT +L+CF  S  ++ +  NH  R+ E
Sbjct: 1021 TTRMLYCFSESPAKNLRDINHMLRQGE 1047


>SB_27564| Best HMM Match : IPT (HMM E-Value=8.6)
          Length = 220

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 199 TSKQQLVAGTETETKSKHRFVEAQASSTAVPLNYYTV-FKTVQQGIPKDSIIVSEGANTM 375
           +SK+   A T   T  +  F+EAQ S     ++Y    ++  QQG P   ++ SEG  ++
Sbjct: 19  SSKRGRQAPTSRPT-GRTGFLEAQLSVIGKTVSYALASWRPTQQGPPSPPVVASEGTESL 77


>SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)
          Length = 426

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 192 ENFLSDNLFTRASVKGLMSECTANSDF 112
           EN  S     + SV+G MS C ANS+F
Sbjct: 23  ENIYSKYKSLKYSVQGCMSSCLANSEF 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,297,982
Number of Sequences: 59808
Number of extensions: 472378
Number of successful extensions: 1197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)