Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0589
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    27   0.43 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.57 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   3.0  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.0  
AF487781-1|AAL96668.1|  533|Anopheles gambiae cytochrome P450 CY...    23   9.2  

>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 369 IRSFADND*IFWNALLNCFENSVVVQWYCSAACLSLYKSV 250
           IRS  D+  +FW  L +C  + VV +WY     L + K++
Sbjct: 227 IRSH-DHPVMFWPDLASCHYSKVVREWYAEKGVLFVPKNL 265


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 47  RYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSER-KFSLQPQ 205
           R A   +  ++E   E+F ++ +S+LAV+    P   A +++L ++ +FS  P+
Sbjct: 490 RCAKQSETTRIEKQLEQFESAPRSKLAVYGTNMPALVARIRQLHQQGQFSEMPR 543


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 357 ADND*IFWNALLNCFENSVVVQWYCSAACLSLYK 256
           ADN  + W ALL  ++NS V++     A  SL K
Sbjct: 185 ADNYYVTWEALLKRYDNSKVLKREYFKAFYSLEK 218


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 253  RFVEAQASSTAVPLNYYTVFKTVQQGIPK 339
            RFV  Q SS  +   Y +V K  Q+GI K
Sbjct: 1913 RFVVQQNSSNVMYYTYNSVGKLKQRGIVK 1941


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 253  RFVEAQASSTAVPLNYYTVFKTVQQGIPK 339
            RFV  Q SS  +   Y +V K  Q+GI K
Sbjct: 1914 RFVVQQNSSNVMYYTYNSVGKLKQRGIVK 1942


>AF487781-1|AAL96668.1|  533|Anopheles gambiae cytochrome P450
           CYP9L1 protein protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 400 NNHPRHRLDAGTFGTMGVGPGFAIAA 477
           N+  +H++  G +   G+GP   IA+
Sbjct: 453 NDENKHKIPLGAYLPFGIGPRNCIAS 478


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,198
Number of Sequences: 2352
Number of extensions: 17097
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)