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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0589
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...   119   2e-27
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...   119   2e-27
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    60   1e-09
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   5.6  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   5.6  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   5.6  
AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic ace...    28   7.4  
AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinate...    28   7.4  

>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
 Frame = +1

Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408
           E   K+R  VE      + PLNYY  ++ +++ +   D I+++EGANTMDIGR ++ +  
Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471

Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
           P+ RLDAGTFGTMGVG GF++AAA+W RD++P     V++     GFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531

Query: 589 P 591
           P
Sbjct: 532 P 532



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/81 (38%), Positives = 50/81 (61%)
 Frame = +2

Query: 8   ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
           AR NW+LHFG PPR+  DVK++Q++I PEEFH + K+E+ +  DI      L  RL +  
Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399

Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
           +    ++  W++ L++  + N
Sbjct: 400 YD---ESTEWFKKLRENAEKN 417


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
 Frame = +1

Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408
           E   K+R  VE      + PLNYY  ++ +++ +   D I+++EGANTMDIGR ++ +  
Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471

Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
           P+ RLDAGTFGTMGVG GF++AAA+W RD++P     V++     GFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531

Query: 589 P 591
           P
Sbjct: 532 P 532



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 31/81 (38%), Positives = 50/81 (61%)
 Frame = +2

Query: 8   ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
           AR NW+LHFG PPR+  DVK++Q++I PEEFH + K+E+ +  DI      L  RL +  
Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399

Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
           +    ++  W++ L++  + N
Sbjct: 400 YD---ESTEWFKKLRENAEKN 417


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 36/121 (29%), Positives = 62/121 (51%)
 Frame = +1

Query: 229 ETETKSKHRFVEAQASSTAVPLNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 408
           E E+ +  +  +   +    PLN+    +T+ Q +P D+I+V++G + +     ++    
Sbjct: 434 EKESANAKKMEQKLTNGFLNPLNF---LRTLDQSLPDDAILVADGGDFVGSAAYIVRPRG 490

Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
           P   LD G FGT+GVG GFA+ A    +   P    +++      G+S ME +T  R+KL
Sbjct: 491 PLQWLDPGAFGTLGVGGGFALGA----KTVYPKRPVYIIWGDGSCGYSLMEYDTFARHKL 546

Query: 589 P 591
           P
Sbjct: 547 P 547


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
           E +P TS++ PL    LLFTM+++T ++   ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
           E +P TS++ PL    LLFTM+++T ++   ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
           E +P TS++ PL    LLFTM+++T ++   ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344


>AF288374-1|AAK83056.1|  502|Caenorhabditis elegans nicotinic
           acetylcholine receptoralpha subunit protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
           +E +P TSL  PL    LLFTM+++T ++   +V++++
Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346


>AC006708-21|AAF60421.3|  502|Caenorhabditis elegans Uncoordinated
           protein 63 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
           +E +P TSL  PL    LLFTM+++T ++   +V++++
Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,380
Number of Sequences: 27780
Number of extensions: 361805
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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