Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0589
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical pr... 119 2e-27
AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical ... 60 1e-09
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.6
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.6
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 5.6
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 28 7.4
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 28 7.4
>Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3b protein.
Length = 634
Score = 119 bits (287), Expect = 2e-27
Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Frame = +1
Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408
E K+R VE + PLNYY ++ +++ + D I+++EGANTMDIGR ++ +
Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471
Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
P+ RLDAGTFGTMGVG GF++AAA+W RD++P V++ GFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531
Query: 589 P 591
P
Sbjct: 532 P 532
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +2
Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
AR NW+LHFG PPR+ DVK++Q++I PEEFH + K+E+ + DI L RL +
Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399
Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
+ ++ W++ L++ + N
Sbjct: 400 YD---ESTEWFKKLRENAEKN 417
>Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3a protein.
Length = 634
Score = 119 bits (287), Expect = 2e-27
Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%)
Frame = +1
Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408
E K+R VE + PLNYY ++ +++ + D I+++EGANTMDIGR ++ +
Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471
Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
P+ RLDAGTFGTMGVG GF++AAA+W RD++P V++ GFS ME+ET+ RY L
Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531
Query: 589 P 591
P
Sbjct: 532 P 532
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = +2
Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
AR NW+LHFG PPR+ DVK++Q++I PEEFH + K+E+ + DI L RL +
Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399
Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
+ ++ W++ L++ + N
Sbjct: 400 YD---ESTEWFKKLRENAEKN 417
>AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical
protein T26C12.1 protein.
Length = 640
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/121 (29%), Positives = 62/121 (51%)
Frame = +1
Query: 229 ETETKSKHRFVEAQASSTAVPLNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 408
E E+ + + + + PLN+ +T+ Q +P D+I+V++G + + ++
Sbjct: 434 EKESANAKKMEQKLTNGFLNPLNF---LRTLDQSLPDDAILVADGGDFVGSAAYIVRPRG 490
Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588
P LD G FGT+GVG GFA+ A + P +++ G+S ME +T R+KL
Sbjct: 491 PLQWLDPGAFGTLGVGGGFALGA----KTVYPKRPVYIIWGDGSCGYSLMEYDTFARHKL 546
Query: 589 P 591
P
Sbjct: 547 P 547
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -1
Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
E +P TS++ PL LLFTM+++T ++ ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -1
Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
E +P TS++ PL LLFTM+++T ++ ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = -1
Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
E +P TS++ PL LLFTM+++T ++ ++S+++
Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
+E +P TSL PL LLFTM+++T ++ +V++++
Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = -1
Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555
+E +P TSL PL LLFTM+++T ++ +V++++
Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,380
Number of Sequences: 27780
Number of extensions: 361805
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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