BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0589 (698 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical pr... 119 2e-27 Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical pr... 119 2e-27 AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical ... 60 1e-09 X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.6 X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 28 5.6 U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 28 5.6 AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 28 7.4 AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 28 7.4 >Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical protein B0334.3b protein. Length = 634 Score = 119 bits (287), Expect = 2e-27 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%) Frame = +1 Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408 E K+R VE + PLNYY ++ +++ + D I+++EGANTMDIGR ++ + Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471 Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588 P+ RLDAGTFGTMGVG GF++AAA+W RD++P V++ GFS ME+ET+ RY L Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531 Query: 589 P 591 P Sbjct: 532 P 532 Score = 72.1 bits (169), Expect = 3e-13 Identities = 31/81 (38%), Positives = 50/81 (61%) Frame = +2 Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187 AR NW+LHFG PPR+ DVK++Q++I PEEFH + K+E+ + DI L RL + Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399 Query: 188 FSLQPQNNSWWQGLKQKQKAN 250 + ++ W++ L++ + N Sbjct: 400 YD---ESTEWFKKLRENAEKN 417 >Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical protein B0334.3a protein. Length = 634 Score = 119 bits (287), Expect = 2e-27 Identities = 57/121 (47%), Positives = 81/121 (66%), Gaps = 2/121 (1%) Frame = +1 Query: 235 ETKSKHRF-VEAQASSTAVPLNYYTVFKTVQQGIPK-DSIIVSEGANTMDIGRGLLLNNH 408 E K+R VE + PLNYY ++ +++ + D I+++EGANTMDIGR ++ + Sbjct: 412 ENAEKNRAAVEKFVDDHSTPLNYYAAYQPIREFLANNDVIVINEGANTMDIGRTMMPSRL 471 Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588 P+ RLDAGTFGTMGVG GF++AAA+W RD++P V++ GFS ME+ET+ RY L Sbjct: 472 PKRRLDAGTFGTMGVGHGFSLAAALWARDHSPKTKVLVVQGDSAFGFSAMELETIARYNL 531 Query: 589 P 591 P Sbjct: 532 P 532 Score = 72.1 bits (169), Expect = 3e-13 Identities = 31/81 (38%), Positives = 50/81 (61%) Frame = +2 Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187 AR NW+LHFG PPR+ DVK++Q++I PEEFH + K+E+ + DI L RL + Sbjct: 340 ARFNWILHFGLPPRFQKDVKVVQIDICPEEFHQNVKTEVPLLGDIGETLAELTPRLGDWT 399 Query: 188 FSLQPQNNSWWQGLKQKQKAN 250 + ++ W++ L++ + N Sbjct: 400 YD---ESTEWFKKLRENAEKN 417 >AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical protein T26C12.1 protein. Length = 640 Score = 60.1 bits (139), Expect = 1e-09 Identities = 36/121 (29%), Positives = 62/121 (51%) Frame = +1 Query: 229 ETETKSKHRFVEAQASSTAVPLNYYTVFKTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 408 E E+ + + + + PLN+ +T+ Q +P D+I+V++G + + ++ Sbjct: 434 EKESANAKKMEQKLTNGFLNPLNF---LRTLDQSLPDDAILVADGGDFVGSAAYIVRPRG 490 Query: 409 PRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEIETMFRYKL 588 P LD G FGT+GVG GFA+ A + P +++ G+S ME +T R+KL Sbjct: 491 PLQWLDPGAFGTLGVGGGFALGA----KTVYPKRPVYIIWGDGSCGYSLMEYDTFARHKL 546 Query: 589 P 591 P Sbjct: 547 P 547 >X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic acetylcholine receptorsubunit protein. Length = 511 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -1 Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555 E +P TS++ PL LLFTM+++T ++ ++S+++ Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344 >X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic acetylcholine receptorsubunit protein. Length = 511 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -1 Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555 E +P TS++ PL LLFTM+++T ++ ++S+++ Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344 >U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated protein 38 protein. Length = 511 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%) Frame = -1 Query: 662 EYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555 E +P TS++ PL LLFTM+++T ++ ++S+++ Sbjct: 308 EIIPATSITLPLIGKYLLFTMVMVTLSVVVTVISLNL 344 >AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic acetylcholine receptoralpha subunit protein. Length = 502 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Frame = -1 Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555 +E +P TSL PL LLFTM+++T ++ +V++++ Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346 >AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated protein 63 protein. Length = 502 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Frame = -1 Query: 665 IEYLPITSLSNPLXIP-LLFTMIIITGNLYRNIVSISM 555 +E +P TSL PL LLFTM+++T ++ +V++++ Sbjct: 309 VEIIPSTSLVIPLIGKYLLFTMVLVTLSVVVTVVTLNV 346 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,526,380 Number of Sequences: 27780 Number of extensions: 361805 Number of successful extensions: 1022 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 959 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1017 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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