Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0589
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 313 KTVQQGIPKDSIIVSEGANTMDIGRGLLLNNH 408
           KTV     KD     EG  +   GRG ++ N+
Sbjct: 7   KTVSYTNKKDESYFDEGGRSYGKGRGFIIQNN 38


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 82 FDLNN-FNVGRISRRLSKVQ 26
          +DL N FN+ R  R+LSK Q
Sbjct: 14 YDLENEFNINRPRRKLSKKQ 33


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 459 WLRYCSSNVVPRLCTW*RVICVEGDSAF 542
           WL + + N++  +CT     C  G +AF
Sbjct: 632 WLPFFTCNIMDAICTKLTADCQPGVTAF 659



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 302 TLFSKQFNKAFQKIQS 349
           T+F+ +F KAF K+ S
Sbjct: 678 TVFNPEFRKAFHKLVS 693


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 249 FAFCFCFSPCHQLLF*GCNENFLSDNLFTRAS 154
           F FC C  P H L+  G  E F  + LF   S
Sbjct: 576 FDFCGCGWPQHMLIPKGNKEGFAME-LFVMVS 606


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 426 CWYIWHYGGRTWLRYCSSNVV 488
           CW +  YG R +  + + +V+
Sbjct: 828 CWEVMSYGERPYWNWSNQDVI 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,856
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)