Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0589
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s... 94 9e-20
At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger) fa... 31 0.56
At1g54300.1 68414.m06190 hypothetical protein 31 0.73
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 30 1.7
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 2.2
At5g38840.1 68418.m04698 forkhead-associated domain-containing p... 29 3.9
At4g07350.1 68417.m01129 hypothetical protein 29 3.9
At5g62600.1 68418.m07856 transportin-SR-related contains weak si... 28 5.2
At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein ... 28 6.8
At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein ... 28 6.8
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 9.0
>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
GI:6273457; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 572
Score = 93.9 bits (223), Expect = 9e-20
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = +1
Query: 217 VAGTETETKSKHRFVEAQASSTAVPLNYYTVFKTVQQGI----PKDSIIVSEGANTMDIG 384
V + K +E Q + VP N+ T + ++ I ++VSEGANTMD+G
Sbjct: 352 VESISKKAKENGEKMEIQLAKDVVPFNFLTPMRIIRDAILAVEGPSPVVVSEGANTMDVG 411
Query: 385 RGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRDYAPGNVSFVLKETLLLGFSGMEI 564
R +L+ PR RLDAGT+GTMGVG G+ IAAA+ +P + ++ GFS ME+
Sbjct: 412 RSVLVQKEPRTRLDAGTWGTMGVGLGYCIAAAV----ASPDRLVVAVEGDSGFGFSAMEV 467
Query: 565 ETMFRYKL 588
ET+ RY L
Sbjct: 468 ETLVRYNL 475
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = +2
Query: 8 ARMNWMLHFGQPPRYAPDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERK 187
AR+NW+LHFG+ P++ DVK I V++S EE +K L + D + L + + +
Sbjct: 284 ARLNWLLHFGESPKWDKDVKFILVDVSEEEI-ELRKPHLGIVGDAKTVIGLLNREIKDDP 342
Query: 188 FSLQPQNNSWWQGLKQKQKAN 250
F L ++NSW + + +K K N
Sbjct: 343 FCL-GKSNSWVESISKKAKEN 362
>At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 KKQTPICRG-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 413
+++ P G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 414 TQAR 425
TQ R
Sbjct: 291 TQNR 294
>At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 KKQTPICRG-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 413
+++ P G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 414 TQAR 425
TQ R
Sbjct: 291 TQNR 294
>At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 328
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 240 KKQTPICRG-SSKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWP-RFIAQQSSE 413
+++ P G SS Q+ +T + +SS+ + R N +RR+ + +WP R SS
Sbjct: 231 RQELPSASGPSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSS 290
Query: 414 TQAR 425
TQ R
Sbjct: 291 TQNR 294
>At1g54300.1 68414.m06190 hypothetical protein
Length = 314
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 388 GLLLNNHPRHRLDAGTFGTMGVGPG-FAIAAAMWCRD-YAPGN 510
G +NN P+H G G +GVG G F++A W R+ Y+P N
Sbjct: 175 GFNVNNGPQHHFSQG-IGGVGVGEGNFSMANGGWQRNSYSPVN 216
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 QARMNWMLHF-GQPPRYAPDVKIIQVEISPEEFHNSKKSE 121
+A +N LHF +P R+ PD K + ++ EEF K +
Sbjct: 240 EALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPD 279
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 528 GDSAFGLLRHGNRDNV 575
GD AFG+L HGNR++V
Sbjct: 383 GDGAFGVLGHGNRESV 398
>At5g38840.1 68418.m04698 forkhead-associated domain-containing
protein / FHA domain-containing protein related to
adaptor protein kanadaptin [Homo sapiens]
gi|13562130|gb|AAK29177
Length = 735
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 41 PPRYA--PDVKIIQVEISPEEFHNSKKSELAVHSD--IRPFT 154
PPR PD+K +V + PE SK + V +D +RP T
Sbjct: 41 PPRNPNPPDLKTTEVVVEPEPIEESKDDSVTVDADKPVRPRT 82
>At4g07350.1 68417.m01129 hypothetical protein
Length = 330
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 56 PDVKIIQVEISPEEFHNSKKSELAVHSDIRPFTEALVKRLSERKFSLQPQNNSWWQGLK 232
PD + + SP++ ++ KS+ HSD +P T A K + + +N W K
Sbjct: 55 PDNSLRSTQSSPQKIPHTPKSKSVFHSDYKP-TNAFFKFSGKEDYLEWEKNMDEWFSYK 112
>At5g62600.1 68418.m07856 transportin-SR-related contains weak
similarity to transportin-SR (GI:5052414) [Homo sapiens]
Length = 958
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 337 KDSIIVSEGANTMDIGRGLLLNNHPRHRLDAGTFGTMGVGPGFAIAAAMWCRD 495
+D+II+ GA I L P RLD T+ + + + + A W ++
Sbjct: 834 RDNIIIPRGATITRILIASLAGALPSSRLDTVTYSLLALTRTYRLQAVSWAKE 886
>At3g04970.2 68416.m00539 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 316
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 270 SKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWPRFIAQQSSETQARCWYIWHY 446
SK+ CST ++ + + ++H N C R ++H W + + + +WH+
Sbjct: 158 SKKECSTCKIP---KPARSKHCSICNRCVARFDHHCGWMNNCIGERNTKYFMAFLLWHF 213
>At3g04970.1 68416.m00540 zinc finger (DHHC type) family protein
similar to Golgi-specific DHHC zinc figer protein [Mus
musculus] GI:21728103; contains Pfam profile PF01529:
DHHC zinc finger domain
Length = 397
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 270 SKQHCSTTELLHCFQNSSTRHSKRFNHCQRRSEYHGYWPRFIAQQSSETQARCWYIWHY 446
SK+ CST ++ + + ++H N C R ++H W + + + +WH+
Sbjct: 158 SKKECSTCKIP---KPARSKHCSICNRCVARFDHHCGWMNNCIGERNTKYFMAFLLWHF 213
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 528 GDSAFGLLRHGNRDNV 575
GD AFG+L HG+R++V
Sbjct: 1334 GDGAFGVLGHGDRESV 1349
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,341
Number of Sequences: 28952
Number of extensions: 324444
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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