Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0588
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    27   7.9  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    27   7.9  

>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 388 YFIR*NLFTFTWAIRFRVTLSFKLNTFKFFTYYLIACSAINFFSSK 251
           Y+    LF+FT  + F +  S ++   KF  +  I C  I FF SK
Sbjct: 148 YYAANYLFSFTVMVSFYIHNSDQVELRKF-AFKKIPCPTIEFFDSK 192


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 388 YFIR*NLFTFTWAIRFRVTLSFKLNTFKFFTYYLIACSAINFFSSK 251
           Y+    LF+FT  + F +  S ++   KF  +  I C  I FF SK
Sbjct: 148 YYAANYLFSFTVMVSFYIHNSDQVELRKF-AFKKIPCPTIEFFDSK 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,336
Number of Sequences: 27780
Number of extensions: 203655
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)