Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0587
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.4  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   5.8  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   7.6  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   7.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 145  SLQ-KTVKKHIHLHNRRSYR*KRSLPDIRLI--YRKNCKIKNTAGMLRCTIDNTLLYKIY 315
            SLQ +TV+K   +H R+SY+   S  DI L+  Y+ N    +     R  +DNT   K +
Sbjct: 1627 SLQIETVQKET-IHPRKSYKMNSSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYW 1685


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 649 LPTGCPGPSNRKPRYCFHGQN*ARPVVPYRRGLTRPSLPTSKYPNL 512
           LPTGC    +R+     H Q   R   P RR  +  +LP     N+
Sbjct: 106 LPTGCGRQFSRRDLLLRHQQKIHRNPQPRRRRRSTTALPNPSLSNV 151


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 577 PVVPYRRGLTRPSLPT--SKYPNLH 509
           PVV YR  ++ PS  T  SK PN H
Sbjct: 559 PVVSYRESVSEPSSMTALSKSPNKH 583


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 577 PVVPYRRGLTRPSLPT--SKYPNLH 509
           PVV YR  ++ PS  T  SK PN H
Sbjct: 559 PVVSYRESVSEPSSMTALSKSPNKH 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,219
Number of Sequences: 5004
Number of extensions: 39805
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)