Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0587
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396...    30   2.0  
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355...    29   2.6  
01_06_1046 + 34087867-34089402                                         28   7.9  

>02_05_0246 +
           27136590-27138610,27138933-27139056,27139401-27139694,
           27139776-27139978,27140307-27140589
          Length = 974

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 629 PFEPETALLLSRPELGQAGGTLPARTHKTVPT 534
           P   E   L    EL +AG T+PA    TVPT
Sbjct: 532 PLVDENQFLAEMHELQRAGATIPAELRSTVPT 563


>06_01_0497 +
           3555919-3557154,3557815-3558143,3558177-3558775,
           3558919-3560393
          Length = 1212

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 650 VTNRLPRPFEPETALLLSRPELGQAGGTLPARTHKTVPTH 531
           V    P+  E   AL + + ELG+AGG+L ++  K +  H
Sbjct: 340 VLMHFPQDLETALALAILQEELGEAGGSLVSKDGKKLGDH 379


>01_06_1046 + 34087867-34089402
          Length = 511

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 163 KKHIHLHNRRSYR*KRSLPDIRLIYRKNCKIKNTAGMLRCTIDNTLLYK 309
           KK   +H  +SY    +LP I  I  K+  +K +  +++C+  NT+ YK
Sbjct: 33  KKKPRIHGLKSYPVVGTLPHI--IKNKHRFLKWSTSIMKCSPTNTMSYK 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,641,578
Number of Sequences: 37544
Number of extensions: 260260
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)