Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0587
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.                   30   6.6  
U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.               30   6.6  
BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein.        30   6.6  
BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein.        30   6.6  

>Y08262-1|CAA69589.1|  914|Homo sapiens SCA2 protein.
          Length = 914

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509
           P+ CP PS+R P     G N      A P  P  R  +RPS P S +P+ H
Sbjct: 472 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 521


>U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein.
          Length = 1312

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509
           P+ CP PS+R P     G N      A P  P  R  +RPS P S +P+ H
Sbjct: 552 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 601


>BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein.
          Length = 1006

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509
           P+ CP PS+R P     G N      A P  P  R  +RPS P S +P+ H
Sbjct: 264 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 313


>BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein.
          Length = 1127

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509
           P+ CP PS+R P     G N      A P  P  R  +RPS P S +P+ H
Sbjct: 342 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,812,799
Number of Sequences: 237096
Number of extensions: 1527518
Number of successful extensions: 2686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)