BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0587 (679 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Y08262-1|CAA69589.1| 914|Homo sapiens SCA2 protein. 30 6.6 U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein. 30 6.6 BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein. 30 6.6 BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein. 30 6.6 >Y08262-1|CAA69589.1| 914|Homo sapiens SCA2 protein. Length = 914 Score = 30.3 bits (65), Expect = 6.6 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509 P+ CP PS+R P G N A P P R +RPS P S +P+ H Sbjct: 472 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 521 >U70323-1|AAB19200.1| 1312|Homo sapiens ataxin-2 protein. Length = 1312 Score = 30.3 bits (65), Expect = 6.6 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509 P+ CP PS+R P G N A P P R +RPS P S +P+ H Sbjct: 552 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 601 >BC114546-1|AAI14547.1| 1006|Homo sapiens ATXN2 protein protein. Length = 1006 Score = 30.3 bits (65), Expect = 6.6 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509 P+ CP PS+R P G N A P P R +RPS P S +P+ H Sbjct: 264 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 313 >BC111757-1|AAI11758.1| 1127|Homo sapiens ATXN2 protein protein. Length = 1127 Score = 30.3 bits (65), Expect = 6.6 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 646 PTGCPGPSNRKPRYCFHGQN-----*ARPVVPYRRGLTRPSLPTSKYPNLH 509 P+ CP PS+R P G N A P P R +RPS P S +P+ H Sbjct: 342 PSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPS-HPSAH 391 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 80,812,799 Number of Sequences: 237096 Number of extensions: 1527518 Number of successful extensions: 2686 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2682 length of database: 76,859,062 effective HSP length: 88 effective length of database: 55,994,614 effective search space used: 7671262118 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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