BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0587 (679 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g24090.1 68415.m02877 ribosomal protein L35 family protein co... 31 0.93 At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 28 6.5 At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 27 8.6 At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 27 8.6 >At2g24090.1 68415.m02877 ribosomal protein L35 family protein contains Pfam profile PF01632: ribosomal protein L35 Length = 145 Score = 30.7 bits (66), Expect = 0.93 Identities = 22/56 (39%), Positives = 29/56 (51%) Frame = +3 Query: 12 RLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPSRA*RSFTSKNSQKAHTF 179 R SP ++L SV A SL S++ LR V +KI + S NSQK H+F Sbjct: 18 RSSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKI------STVASPNSQKLHSF 67 >At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q27974 Auxilin {Bos taurus} Length = 909 Score = 27.9 bits (59), Expect = 6.5 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = -1 Query: 661 PRYKLPTGCPGPSNRKPRYCFHGQN*ARPVVPYRRGLTRPSLPTSKY 521 P + PT P P+ P RP P ++ + PS+PTS Y Sbjct: 361 PLFTQPTSAPPPTRPPP---------PRPTRPIKKKVNEPSIPTSAY 398 >At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog (GP:1737218) [Arabidopsis thaliana] Length = 623 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +1 Query: 247 CKIKNTAGMLRCTIDNTLLY 306 CK KNT G C+ N LLY Sbjct: 527 CKCKNTWGSYECSCSNGLLY 546 >At2g30290.1 68415.m03687 vacuolar sorting receptor, putative similar to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI:1737218 Length = 625 Score = 27.5 bits (58), Expect = 8.6 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 241 KNCKIKNTAGMLRCTIDNTLLY 306 ++CK KNT G C+ +LLY Sbjct: 529 RDCKCKNTWGSYECSCSGSLLY 550 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,789,337 Number of Sequences: 28952 Number of extensions: 205201 Number of successful extensions: 415 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 405 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 415 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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