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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0587
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24090.1 68415.m02877 ribosomal protein L35 family protein co...    31   0.93 
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    28   6.5  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    27   8.6  
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim...    27   8.6  

>At2g24090.1 68415.m02877 ribosomal protein L35 family protein
           contains Pfam profile PF01632: ribosomal protein L35
          Length = 145

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +3

Query: 12  RLRSPCLTLSQSVSIALSLFFDTSVAYLRDVTSVKILPSRA*RSFTSKNSQKAHTF 179
           R  SP ++L  SV  A SL    S++ LR V  +KI       +  S NSQK H+F
Sbjct: 18  RSSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKI------STVASPNSQKLHSF 67


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 661 PRYKLPTGCPGPSNRKPRYCFHGQN*ARPVVPYRRGLTRPSLPTSKY 521
           P +  PT  P P+   P          RP  P ++ +  PS+PTS Y
Sbjct: 361 PLFTQPTSAPPPTRPPP---------PRPTRPIKKKVNEPSIPTSAY 398


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 247 CKIKNTAGMLRCTIDNTLLY 306
           CK KNT G   C+  N LLY
Sbjct: 527 CKCKNTWGSYECSCSNGLLY 546


>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
           similar to vacuolar sorting receptor homolog
           [Arabidopsis thaliana] GI:1737218
          Length = 625

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 241 KNCKIKNTAGMLRCTIDNTLLY 306
           ++CK KNT G   C+   +LLY
Sbjct: 529 RDCKCKNTWGSYECSCSGSLLY 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,337
Number of Sequences: 28952
Number of extensions: 205201
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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