Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0586
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 100 2e-22
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 100 2e-22
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.89
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.7
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.6
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 100 bits (240), Expect = 2e-22
Identities = 47/89 (52%), Positives = 65/89 (73%)
Frame = +3
Query: 255 TDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 434
T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182
Query: 435 YDAESKKFNAEVHRAHIFGLHVAE**EVL 521
+D E+++ + E R +I+G HVAE E+L
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEML 211
Score = 92.7 bits (220), Expect = 5e-20
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +1
Query: 10 RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
+NKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+
Sbjct: 41 KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100
Query: 190 TG 195
TG
Sbjct: 101 TG 102
Score = 54.4 bits (125), Expect = 2e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEA 688
M L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K + K E+
Sbjct: 208 MEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAES 267
Query: 689 LEQTQANHLAE 721
L+ TQ AE
Sbjct: 268 LKYTQRKLTAE 278
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 100 bits (240), Expect = 2e-22
Identities = 47/89 (52%), Positives = 65/89 (73%)
Frame = +3
Query: 255 TDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 434
T+ G+ E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182
Query: 435 YDAESKKFNAEVHRAHIFGLHVAE**EVL 521
+D E+++ + E R +I+G HVAE E+L
Sbjct: 183 FDIETEELDDETLRKYIYGGHVAEYMEML 211
Score = 92.7 bits (220), Expect = 5e-20
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +1
Query: 10 RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
+NKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+
Sbjct: 41 KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100
Query: 190 TG 195
TG
Sbjct: 101 TG 102
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEA 688
M L DDE+ +++QFS I G+ +D +E IY +A+ IR DPS +K + K E+
Sbjct: 208 MEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAES 267
Query: 689 LEQTQANHLAE 721
L+ TQ AE
Sbjct: 268 LKHTQRKLTAE 278
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 524 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEAL-EQT 700
+++++S ++ +K ++ V +KK +E IR+D LK+D K +L ++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKERSLMKEC 1082
Query: 701 QANHLAE 721
+N+ +E
Sbjct: 1083 HSNYESE 1089
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 220 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 128
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 201 ISTKTASKTWT*HLIHWHTDVTGDEYNVEPVDNG 302
+S+K ++W + I W G N +P DNG
Sbjct: 1366 VSSKYGKRSWARYPIFWGLRKIGKLPNPDPADNG 1399
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 581 TADAIEAIYKKAHEAIRADPSHKKKELK 664
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 594 LKPSTRKPMKPSVRIHPTRRK 656
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,463
Number of Sequences: 5004
Number of extensions: 67101
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -