Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0586
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 109 2e-24
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 108 5e-24
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 30 1.6
04_04_0887 + 29095087-29096166 28 6.5
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 8.6
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 8.6
06_03_1146 - 28004896-28005554,28005664-28005844 28 8.6
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 28 8.6
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 28 8.6
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 109 bits (263), Expect = 2e-24
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Frame = +3
Query: 252 HTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 431
+ + TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 120 NVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178
Query: 432 GYDAESKKFNAEVHRAHIFGLHVAE**EVLNRMMRILSRDNSA--ST*N*ESLQMLLKPS 605
G+ + K+ ++++HR +I+G HVA + + M A S + + S
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVA---DYMRSMAEEEPEKFQAHFSEYLKKGIDADGMES 235
Query: 606 TRKPMKPSVRIHPTRRKS*RKTLSKQKRWNKRKLT 710
K + ++R PT KS +K + KR+N +KLT
Sbjct: 236 LYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLT 270
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/81 (54%), Positives = 54/81 (66%)
Frame = +1
Query: 10 RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
+NKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 42 KNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYC 98
Query: 190 TGXXXXXXXXXXXXXDTLYTG 252
TG D Y G
Sbjct: 99 TGLLLARRVLTLRGLDQEYEG 119
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKK 667
MRS+ +++ + F+ FS+Y+K G+ AD +E++YKK H AIRADP+ K K+
Sbjct: 205 MRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKE 257
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 108 bits (259), Expect = 5e-24
Identities = 62/153 (40%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Frame = +3
Query: 258 DVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGY 437
+ TG++Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+
Sbjct: 122 EATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 180
Query: 438 DAESKKFNAEVHRAHIFGLHVAE**EVLNRMMRILSRDNSA--ST*N*ESLQMLLKPSTR 611
+ K+ ++++HR +I+G HVA + + M A S + + +
Sbjct: 181 KKDEKQLDSDIHRKYIYGGHVA---DYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALY 237
Query: 612 KPMKPSVRIHPTRRKS*RKTLSKQKRWNKRKLT 710
K + ++R PT KS +K + KR+N +KLT
Sbjct: 238 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLT 270
Score = 94.7 bits (225), Expect = 7e-20
Identities = 44/81 (54%), Positives = 54/81 (66%)
Frame = +1
Query: 10 RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
+NKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 42 KNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYC 98
Query: 190 TGXXXXXXXXXXXXXDTLYTG 252
TG D Y G
Sbjct: 99 TGLLLARRVLKLRGLDQEYEG 119
Score = 60.9 bits (141), Expect = 1e-09
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKK 667
MRS+ +++ + F+ FS+Y+K G+ AD +EA+YKK H AIRADP+ K K+
Sbjct: 205 MRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKE 257
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -3
Query: 409 GTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVCQCIRCQ 233
GT P++A +P++ +PV V ++ L P + + +SP T V + +R +
Sbjct: 189 GTKGSPASAAAASPRSPSPVAVETPKKTEQQLKVTEPPAEEESSINSPATDVFEVVRTE 247
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 705 ACVCSSASVLTESFFNSFFLWDGSARMASWAFL*MASIASAVTPSFMYLLNCL 547
A +S LT +S FLWD + A + +SA TPSF LL L
Sbjct: 57 ASASASTGTLTVPSASSSFLWDDADAEADGEEVDFKRESSATTPSFSGLLRQL 109
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 588 MLLKPSTRKPMKPSVRIHPTRR 653
++++PS+R P P+ R PTRR
Sbjct: 288 VVMRPSSRPPQPPASRTSPTRR 309
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 16 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 138
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -3
Query: 397 PPSTAPFIAPKTRAPVVVRAKPTSK*HLN--APGPLSTGSTLYSSP 266
PPS AP A + AP V P+ ++ AP P T ST S P
Sbjct: 164 PPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPP 209
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 584 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALEQTQ 703
AD++ + KKA P KKE K++ K +A E+ +
Sbjct: 779 ADSVPQVQKKAAAPKEQKPKEAKKEAPKEAPKPKAAEKPE 818
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 355 PVVVRAKPTSK*HLNAPGPLSTGSTLYSSP 266
P+ RAKP K N P P++ G + S P
Sbjct: 71 PLTTRAKPKPKNRANPPVPIAPGRQILSIP 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,654,689
Number of Sequences: 37544
Number of extensions: 440563
Number of successful extensions: 1075
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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