Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0586
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 154 6e-38
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 98 6e-21
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_57347| Best HMM Match : Caerin_1 (HMM E-Value=7.6) 32 0.41
SB_59558| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 30 1.7
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 30 1.7
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 30 1.7
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 29 2.9
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 5.0
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.7
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 154 bits (374), Expect = 6e-38
Identities = 71/91 (78%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Frame = +3
Query: 237 HLIHWHTD-VTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 413
H I+ TD V GDEYNVE VD PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 148 HEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 207
Query: 414 SIKRFPGYDAESKKFNAEVHRAHIFGLHVAE 506
S+KRFPGYD+ESK F+AEVHR HIFG HVAE
Sbjct: 208 SMKRFPGYDSESKDFSAEVHRNHIFGKHVAE 238
Score = 81.0 bits (191), Expect = 9e-16
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKD 670
MRSL ++DE+S+KRQFS YIK GV AD+IE IYK AH+AIRADP HKK E KKD
Sbjct: 240 MRSLAEEDEESYKRQFSAYIKNGVDADSIEGIYKAAHQAIRADPVHKKAE-KKD 292
Score = 70.1 bits (164), Expect(2) = 5e-20
Identities = 29/60 (48%), Positives = 41/60 (68%)
Frame = +1
Query: 76 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXDTLYTGT 255
++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG +YTGT
Sbjct: 95 RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154
Score = 45.6 bits (103), Expect(2) = 5e-20
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +1
Query: 10 RNKYNTPKYRLIVRLSNKDVTCQ 78
+NKYNTPKYR +VR++NKD+ CQ
Sbjct: 36 KNKYNTPKYRFVVRITNKDIICQ 58
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 98.3 bits (234), Expect = 6e-21
Identities = 44/60 (73%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 237 HLIHWHTD-VTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 413
H I+ T+ V GDEYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 53 HEIYTGTEEVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112
Score = 81.0 bits (191), Expect = 9e-16
Identities = 38/75 (50%), Positives = 50/75 (66%)
Frame = +1
Query: 79 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXDTLYTGTQ 258
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG +YTGT+
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 259 MSQVMNTMLNLSTMD 303
+V N+ ++D
Sbjct: 61 --EVNGDEYNVESID 73
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 33.1 bits (72), Expect = 0.23
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 509 MRSLEQDDEDSFKRQFSKYI----KLGVTADAIEAIYKKAHEAIRADPSHKKKELKK 667
++ EQ ++ FK++ + Y+ K G T D IE KK H D HK+ KK
Sbjct: 345 VKFFEQKQKEEFKKEETDYLDVFKKGGTTKDKIEKKDKKKHHKKHKDKEHKEHHHKK 401
>SB_57347| Best HMM Match : Caerin_1 (HMM E-Value=7.6)
Length = 152
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 590 AIEAIYKKA--HEAIRADPSHKKKELKKDSVKTEALEQTQ 703
A+E I++K + RADPSH K L K +V+T E TQ
Sbjct: 40 AVERIFQKVFYYPTTRADPSHFVKPLIKSAVQTTTNELTQ 79
>SB_59558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 705 ACVCSSASVLTESFFNSFFLWDGSARMA--SWAFL*MASIASAVTPSFMYL 559
AC C +V+ F ++ +W G A +A WA M A + S +YL
Sbjct: 451 ACACVCGTVVLFVFLSALIIWGGEALLAGKGWAVFLMCLNAVFILVSTLYL 501
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 403 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 281
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 398
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 403 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGST 281
+RP PF+ P +RAP A PT+ P P S TG T
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSSQTGKT 264
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 521 EQDDEDSFKRQFSKYIKLGV--TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALE 694
E+DD+D F+ Q +K G T + K A E A P+ K+KE KK K +A
Sbjct: 348 EKDDDDDFELQLAKPEPEGKKGTKRGKKKTSKDATEESEA-PNKKRKEKKKKKKKKKASS 406
Query: 695 QTQANHLAE 721
+ + AE
Sbjct: 407 KIEPTETAE 415
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 406 TLRPPSTAPFI-APKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVCQC 245
T PP+ P + AP + P A P L+AP PL ST SS ++S C
Sbjct: 557 TAPPPAPPPSVFAPSSAVPTPATAPPPVAATLSAPPPLD--STSGSSTISSATIC 609
>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Frame = -3
Query: 307 PGPLSTGSTLYSSPVTSVCQC------IRCQV 230
P P + G+T +++ +T +CQC IRC+V
Sbjct: 349 PNPCANGATCFNAELTYICQCPVRYMGIRCRV 380
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -3
Query: 400 RPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVT 260
+P S P P T A V R PT+ +P P L +PVT
Sbjct: 85 QPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFFQQQPLVPTPVT 131
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 40 LIVRLSNKDVTCQVAYSRIEGD-HIVC 117
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 608 KKAHEAIRADPSHKKKELKKDSVKTEALEQT 700
KKA EA D +KKE KK K + E+T
Sbjct: 521 KKAKEATEEDDGEEKKEKKKKKKKKKGKEKT 551
>SB_57348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 533 EDSFKRQFSKYIKLG-VTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALEQTQAN 709
+ S KR K++K + + A+ KKA + D +HK K S K +A+ +T++
Sbjct: 203 DKSPKRHEEKHVKKSSIPTKKVVAVVKKAKSNTKKDSAHKPVISK--SPKPKAMSKTKSK 260
Query: 710 H 712
H
Sbjct: 261 H 261
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 88 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 186
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 448 DSAS*PGNLLME*GTLRPPSTAPFIAPKTRAPV 350
D+ P +M T+RPP T F+ T+APV
Sbjct: 1653 DTTVAPETTVMPDTTMRPPKTDVFVTEATKAPV 1685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,138,821
Number of Sequences: 59808
Number of extensions: 540989
Number of successful extensions: 1595
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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