Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0586
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   115   4e-26
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.63 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    29   3.4  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine rece...    28   7.8  
AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear recep...    28   7.8  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    28   7.8  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/81 (64%), Positives = 62/81 (76%)
 Frame = +1

Query: 10  RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
           +NKYNTPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+
Sbjct: 41  KNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYA 100

Query: 190 TGXXXXXXXXXXXXXDTLYTG 252
           TG             D+ Y G
Sbjct: 101 TGLLLARRHLKTIGLDSTYKG 121



 Score =  107 bits (258), Expect = 6e-24
 Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
 Frame = +3

Query: 252 HTDVTGDEYNVEPV-DNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 428
           H ++TG++YNVE   D  P  F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF
Sbjct: 122 HEELTGEDYNVEEEGDRAP--FKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179

Query: 429 PGYDAESKKFNAEVHRAHIFGLHVAE 506
            G+D ESK++NAE HR  I G HVA+
Sbjct: 180 FGFDQESKEYNAEAHRDRILGKHVAD 205



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +2

Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEA 688
           M  L+++DED +KRQFSK++  G+ AD + A Y+K H AIRAD S   K+  K S +  A
Sbjct: 207 MTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPSKRHTA 266

Query: 689 LEQT 700
              T
Sbjct: 267 KRLT 270


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
 Frame = -3

Query: 409 GTLRPPSTA---PFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGSTLYSSPVTSVCQCIR 239
           G    PST+   PF++P      ++ A  +S      P P+S    +  +PV +  + +R
Sbjct: 42  GPSAAPSTSLSPPFLSPSYSMDYIIEAMTSSSSTSPVPPPVSASRPV--APVVARVEGLR 99

Query: 238 CQVQVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQR--TQYGHLQSESRPPGMLH 65
             V V           L   Q  L  +  H N+ T +NK+R  T  G+   E+RPP   H
Sbjct: 100 A-VPVGHRRQHSSPGHLQQFQQELHARHHHANI-TRLNKKRRNTDTGY-DPEARPPKFKH 156


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 279 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 455
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 456 F 458
           F
Sbjct: 128 F 128


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 124  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI 17
            +QR     ++ + + P   HLC R+++  DI  CYI
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYI 1015


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 124  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI 17
            +QR     ++ + + P   HLC R+++  DI  CYI
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYI 1015


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 611  KAHEAIRADPSHKKKELKKDSVKTEALEQTQ 703
            K  + I   PS + KE++++ ++TEALE+ +
Sbjct: 2001 KRSDPIPIAPSQRSKEIEEERIRTEALEEEE 2031


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 19  YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 138
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 584 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALEQTQ 703
           ADA++ I +K  E    +P+  KK  KK+  K E  ++ +
Sbjct: 71  ADAVKKIEEKGEEKKPEEPAKSKKSEKKEKSKNEGSKKEE 110


>Z96048-5|CAB09422.1|  443|Caenorhabditis elegans Hypothetical
           protein F57A10.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 301 PLSTGSTLYSSPVTSVCQCIRCQVQVFE 218
           P++   T YS+ V SV   IRCQ++  E
Sbjct: 318 PMTFNDTHYSASVMSVAPLIRCQIKNIE 345


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 166 SDQPSHHNVATHVNKQRTQYGHLQSESRP 80
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 166 SDQPSHHNVATHVNKQRTQYGHLQSESRP 80
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 166 SDQPSHHNVATHVNKQRTQYGHLQSESRP 80
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>U64846-2|AAG24112.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein35 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 296 VDRFNIVFITCDICVPVYKVSSPSL*SSLRANSR 195
           V+ F+IV ITC + +P YK+   +L  S  +NSR
Sbjct: 202 VNNFSIVAITCALYIPFYKIVRGNLKIS-GSNSR 234


>AF273808-1|AAG15157.1|  442|Caenorhabditis elegans nuclear receptor
           NHR-60 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 301 PLSTGSTLYSSPVTSVCQCIRCQVQVFE 218
           P++   T YS+ V SV   IRCQ++  E
Sbjct: 317 PMTFSDTHYSASVMSVAPLIRCQIKNIE 344


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +2

Query: 566 IKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALEQTQANHLAE 721
           I++G   ++++ +  +  E IR      +KE ++ SVK  A+EQ +A+  AE
Sbjct: 125 IEMGAKLNSLQGVVDEQEETIR------RKEAEERSVKIAAIEQARADLSAE 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,627
Number of Sequences: 27780
Number of extensions: 386944
Number of successful extensions: 1105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)