Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0586
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   111   6e-25
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   109   2e-24
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)...    30   1.8  
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)                28   5.5  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   5.5  
At5g06410.1 68418.m00717 DNAJ heat shock N-terminal domain-conta...    28   7.2  
At3g27025.1 68416.m03381 expressed protein                             27   9.5  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  111 bits (266), Expect = 6e-25
 Identities = 58/153 (37%), Positives = 95/153 (62%)
 Frame = +3

Query: 252 HTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 431
           + + TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 122 NVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 432 GYDAESKKFNAEVHRAHIFGLHVAE**EVLNRMMRILSRDNSAST*N*ESLQMLLKPSTR 611
           G+  E+K+ +AE+HR +I+G HV+   ++L        + + ++    + ++        
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK-KGVEAESIEEMY 239

Query: 612 KPMKPSVRIHPTRRKS*RKTLSKQKRWNKRKLT 710
           K +  ++R  P  +K+ +    + KR+N +KLT
Sbjct: 240 KKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLT 272



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/81 (50%), Positives = 52/81 (64%)
 Frame = +1

Query: 10  RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
           +NKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY 
Sbjct: 41  KNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYC 100

Query: 190 TGXXXXXXXXXXXXXDTLYTG 252
           TG             D  Y G
Sbjct: 101 TGLLLARRVLKMLEMDDEYEG 121



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/50 (52%), Positives = 36/50 (72%)
 Frame = +2

Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKE 658
           M+ L +D+ +  +  FS YIK GV A++IE +YKK H AIRA+P+HKK E
Sbjct: 207 MKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTE 256


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  109 bits (262), Expect = 2e-24
 Identities = 58/153 (37%), Positives = 95/153 (62%)
 Frame = +3

Query: 252 HTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 431
           + + TG++++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 122 NVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 432 GYDAESKKFNAEVHRAHIFGLHVAE**EVLNRMMRILSRDNSAST*N*ESLQMLLKPSTR 611
           G+  E+K+ +AE+HR +I+G HV+   ++L        + + ++    + ++        
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIK-KGVEAESIEELY 239

Query: 612 KPMKPSVRIHPTRRKS*RKTLSKQKRWNKRKLT 710
           K +  ++R  P  +K+ +    + KR+N +KLT
Sbjct: 240 KKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLT 272



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 41/81 (50%), Positives = 52/81 (64%)
 Frame = +1

Query: 10  RNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 189
           +NKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY 
Sbjct: 41  KNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYC 100

Query: 190 TGXXXXXXXXXXXXXDTLYTG 252
           TG             D  Y G
Sbjct: 101 TGLLLARRVLKMLEMDDEYEG 121



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 25/48 (52%), Positives = 34/48 (70%)
 Frame = +2

Query: 509 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 652
           M+ L +D+ +  +  FS YIK GV A++IE +YKK H AIRADP+ KK
Sbjct: 207 MKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKK 254


>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
           nearly identical to SH3 domain-containing protein 1
           [Arabidopsis thaliana] GI:16974676; contains Pfam
           profile PF00018: SH3 domain
          Length = 439

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 578 VTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKTEALEQTQANHLAE 721
           + ++ +  I     E I+++P    K   KD +K+   E+T++NH  E
Sbjct: 291 IKSNPLGKIKASRREEIKSNPQEVTKPSPKDEMKSSPQEETKSNHQKE 338


>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
          Length = 130

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 397 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLSTGST 281
           PP+  P  AP T  P  V   PTS    +AP P S   T
Sbjct: 41  PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSSDAPT 77


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = -3

Query: 445 SAS*PGNLLME*GTLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS--TGSTL-- 278
           + S PG++  + G+   P+T+P   PK+ +PV     P+S    + P P++  + ST+  
Sbjct: 196 ATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPV----SPSSAPMTSPPAPMAPKSSSTIPP 251

Query: 277 YSSPVTS 257
            S+P+TS
Sbjct: 252 SSAPMTS 258


>At5g06410.1 68418.m00717 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|P36540 Chaperone
           protein hscB (HSC20) {Escherichia coli O157:H7};
           contains Pfam profile PF00226 DnaJ domain
          Length = 252

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 476 GSHLWFACC*IMRSLEQ-DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 652
           G    F  C   RS++  DD   + + F    K  +   ++E  YK   + +  D  H K
Sbjct: 71  GEKAAFLFCNSCRSIQPVDDSVDYFQIFGLEKKYEIDPGSLEGKYKDWQKKLHPDLVHNK 130

Query: 653 KELKKDSVKTEALEQTQA 706
            + ++D    ++ + T+A
Sbjct: 131 SKKERDYAAEQSAKVTEA 148


>At3g27025.1 68416.m03381 expressed protein 
          Length = 299

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = +2

Query: 551 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 670
           Q   YI+   T DAI+ ++KK H A    R D      S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,590,673
Number of Sequences: 28952
Number of extensions: 353165
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)