Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0585
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   4.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 138 LVQPQSAHVVCYQGQWSSF 82
           LV   +  VVCY G WS++
Sbjct: 18  LVSATTDKVVCYWGTWSTY 36


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 138 LVQPQSAHVVCYQGQWSSF 82
           +V   +  VVCY G WS++
Sbjct: 14  IVSAATNKVVCYHGIWSTY 32


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 385 RFDILSIRHATLFETLPTDTMLFTRDLWTIKPTP 284
           RF+   IRHA   ET+     +F + + +  PTP
Sbjct: 410 RFEPPQIRHAFNEETVQPGNSVFLKCIASGNPTP 443


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 230 PCSPATCSLP 259
           PC PA C LP
Sbjct: 162 PCDPAVCVLP 171


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 1  N*WIPRAAGGGVGGAKNPRQRHGY 72
          N ++P    GGV  A++P Q   Y
Sbjct: 7  NSYMPDMRNGGVVSAEHPHQHQHY 30


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
          protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 1  N*WIPRAAGGGVGGAKNPRQRHGY 72
          N ++P    GGV  A++P Q   Y
Sbjct: 7  NSYMPDMRNGGVVSAEHPHQHQHY 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,138
Number of Sequences: 336
Number of extensions: 4150
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)