Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0585
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   0.12 
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    27   2.0  
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo...    27   3.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   6.1  
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch...    25   8.1  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   8.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   8.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   8.1  

>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect(2) = 0.12
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 710 FGYTVGTHPGPFPVRRLLERKNSSYRVLLSPESRPTSVLWSSAAHI 573
           F Y  G +PGP    RLL+ KN     L   ES   S++ +S  H+
Sbjct: 60  FIYGEGDNPGPITQWRLLDEKNELKHSL--EESIDYSIVSASLWHM 103



 Score = 24.6 bits (51), Expect(2) = 0.12
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 578 HIQTDPLSTHHCFYNPALH*SLPYNSKMCFGAMYGPTDVLIQSFY 444
           H+  DP++  +  Y+P      PY+S   +   +  +D L +S Y
Sbjct: 142 HVLFDPINGENTSYSPLYQIDEPYHSDEPYAFSFSRSDTL-RSLY 185


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 7   WIPRAAGGGVGGAKNPRQR 63
           W+PR  GGG+GG    ++R
Sbjct: 184 WLPRKLGGGLGGRHYTKER 202


>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
           Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 609 PTFWRKKDSI**ILSFQKPPHRKWTW 686
           P  W K  +I  I +  K PH KW W
Sbjct: 137 PPVWAKMPAI--IQTMNKHPHAKWIW 160


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 349 FETLPTDTMLFTRDLWTIKPTPPWDF 272
           +E  P    +   D+W + PT  WD+
Sbjct: 555 YEGSPASQGILQYDMWNVNPTDLWDW 580


>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
           Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -2

Query: 614 SRPTSVLWSSAAHIQTDPLSTHHCFYNPALH*SLPYNSKMCFGAMYGPTDVLIQSFYLIV 435
           +R ++++      ++ DP+    C Y  A    +P  S   F A  GPT   I  F+ +V
Sbjct: 53  NRYSNIVPYENTRVRLDPMWKEACDYINASIVKIP--SGKTFIATQGPTSNSIDVFWKMV 110

Query: 434 W 432
           W
Sbjct: 111 W 111


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 659 LERKNSSYRVLLSPESRPT 603
           +ER NSSY +L+ P+S  T
Sbjct: 90  MERLNSSYDLLIEPQSHET 108


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 633 SPSFSRKSANLCP 595
           +PSF R+S NLCP
Sbjct: 223 TPSFHRRSINLCP 235


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 352 LFETLPTDTMLFTRDLWTIKPTPPWDFC 269
           L E L TD  L  R    ++  PPWD C
Sbjct: 118 LREALETDPKLKKRLECILETIPPWDVC 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,355
Number of Sequences: 5004
Number of extensions: 71834
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)