Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0585
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 31 0.69
09_02_0236 - 6131072-6131639,6132047-6132180 30 1.6
04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370 30 1.6
09_04_0716 + 19702100-19702250,19702366-19702463,19702527-197026... 30 2.1
04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562 30 2.1
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 25 2.7
09_03_0040 + 11816056-11819069,11819837-11820428 29 2.8
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 29 2.8
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067... 29 3.7
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 3.7
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 3.7
12_02_0931 + 24512496-24512567,24512705-24512806,24512939-245129... 29 4.8
06_01_0978 + 7595641-7595843,7595952-7596072,7596176-7596253,759... 29 4.8
03_02_0319 - 7421357-7421757,7421768-7421843,7424695-7424796,742... 29 4.8
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164... 29 4.8
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 29 4.8
08_01_0190 - 1583044-1583802 28 6.4
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 28 6.4
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 28 6.4
11_01_0796 - 7000747-7001193 28 8.5
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 28 8.5
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 28 8.5
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 28 8.5
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 13 PRAAGGGVGGAKNPRQRHGYHPQKRRPLALVTHNVR-TLRLDEKLVELEE 159
PR GGG GG + PR+ +G P P L+ N+ T R ++ + E+
Sbjct: 37 PRGGGGGGGGGEGPRRGYGRPP---APTGLLVRNISLTARPEDIRIPFEQ 83
>09_02_0236 - 6131072-6131639,6132047-6132180
Length = 233
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +2
Query: 212 RERIR*PCSPATCSL-PRGRAEVPRWCWFYRPQVSREQHC------VRRERLE*GSVPDT 370
R+ R PC CSL PRGR+ C + P HC +R R S P++
Sbjct: 5 RDDARLPCGLRRCSLAPRGRSAALHCCRHHAPVARDPAHCRLDEGRLRPSRAPSPSTPES 64
Query: 371 QNI 379
Q++
Sbjct: 65 QSL 67
>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
Length = 321
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 19 AAGGGVGGAKNPRQRHGYHPQKR 87
+AGGG GG K PR H HP R
Sbjct: 43 SAGGGGGGKKRPRSDHLKHPTYR 65
>09_04_0716 +
19702100-19702250,19702366-19702463,19702527-19702611,
19702950-19703020,19703119-19703209,19703292-19703367,
19704047-19704584
Length = 369
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 7 WIPRAAGGGVGGAKNPRQ 60
WIPR +GGG+GG K Q
Sbjct: 160 WIPRRSGGGLGGKKESGQ 177
>04_04_0139 - 23068868-23069280,23069729-23069831,23070221-23070562
Length = 285
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 247 SGRTARLSYPLPVFGFLINQ*RPSATCPSLLPTRQASRPASECARC 110
+ RT L++PLP+ P P LP R A+RP + A+C
Sbjct: 4 AARTLALAFPLPLCAVS----SPRRATPLALPRRGAARPLASLAQC 45
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 25.0 bits (52), Expect(2) = 2.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 44 APPTPPPAARG 12
APP PPP ARG
Sbjct: 203 APPPPPPPARG 213
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2
Query: 47 LAPPTPPPAA 18
+APP PPPAA
Sbjct: 194 VAPPPPPPAA 203
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -2
Query: 95 SGRRFWGW*PCLCRGFLAPPTPPPAA 18
S +R W P LC F APP PPP A
Sbjct: 32 SAKRSW---PPLCGRFPAPPPPPPTA 54
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -2
Query: 53 GFLAPPTPPPAAR 15
GF APPTPPPAA+
Sbjct: 39 GFSAPPTPPPAAQ 51
>11_04_0289 -
15804766-15804977,15805742-15805862,15806541-15806776,
15807639-15807766,15807873-15807910,15808041-15808129,
15808669-15808774,15811395-15811580
Length = 371
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 117 AHSEAGREACRVGRRDGQV-ALGRHWFIRNPKTGRGYDNLAV 239
A + GR+A VGRR+G V A GR + K G+ D AV
Sbjct: 22 AVAAGGRDAAAVGRREGDVAATGRREWDAAAKVGKEGDAAAV 63
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 149 SWKKRWTSCAGTSLVYQKSE 208
SWKKRW TSLV+ KS+
Sbjct: 51 SWKKRWFILTRTSLVFFKSD 70
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 25 GGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTLRLDEK--LVELEEEMDKLRWDV 186
G G GG K HG P++RR AL+ VR D + L++L++ +D++ D+
Sbjct: 73 GAGDGGGKGVVDVHGLGPRERR--ALLERLVRVADEDNEKFLLKLKDRVDRVGIDM 126
>12_02_0931 +
24512496-24512567,24512705-24512806,24512939-24512984,
24513292-24513355,24513997-24514348,24514497-24514749,
24515069-24515311,24515399-24515518,24515710-24516158
Length = 566
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 630 PSFSRKSANLCPLEFRCPYPN 568
P FS SA+LCPL P+P+
Sbjct: 442 PKFSHLSASLCPLPVPLPFPS 462
>06_01_0978 +
7595641-7595843,7595952-7596072,7596176-7596253,
7596371-7596436,7596556-7596688,7596774-7596841,
7596930-7597002,7597097-7597158,7597240-7597633,
7597768-7597832
Length = 420
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 22 AGGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTL--RLDEKLVELEEEMDKL 174
AGGG GG P + H Y +K++ L L+ N L R D + V L++ +L
Sbjct: 39 AGGGGGGGGKPCRHHAY-SRKQKSLGLLCTNFVALYDREDVESVGLDDAARRL 90
>03_02_0319 -
7421357-7421757,7421768-7421843,7424695-7424796,
7424911-7424982
Length = 216
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 630 PSFSRKSANLCPLEFRCPYPN 568
P FS SA+LCPL P+P+
Sbjct: 92 PKFSHLSASLCPLPVPLPFPS 112
>02_01_0249 -
1644280-1645161,1645328-1645432,1646322-1646805,
1647680-1647884,1648538-1648808
Length = 648
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 19 AAGGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTLRLDEKLVELEE-EMDKLRWDVI 189
AAGGG GG + P+ + P +R + +R + L EK+ ++ + E + +DV+
Sbjct: 32 AAGGGGGGGECPKYKDSKQPLNKR----IDDLLRRMTLAEKIGQMSQIERENATFDVM 85
>01_06_0873 + 32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 697 SGLIQVHFL*GGFWKERIHHIESFFLQKVGQPLSSGVP 584
SG+ F FWKE E+F + G+ LSS VP
Sbjct: 1246 SGMSSYKFSRARFWKEVADVYETFLVGSCGRVLSSDVP 1283
>08_01_0190 - 1583044-1583802
Length = 252
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 95 WPW*HTTCAL*GWTR-SLSSWKKRWTSCAGTSLVYQKSEDRERIR*P 232
WP + + G R S+ W+ W CAG + V Q R +R P
Sbjct: 9 WPLSPSPSSTRGRRRVSVKPWRLWWRRCAGVAAVIQSKIHRRAVRWP 55
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -2
Query: 695 GTHPGPFPVRRLLERKNSSYRVLLSPESRPTSVLWSSAAHIQTDPLSTHHCFYNPALH*S 516
G F R LER + + +++P SR + + + + + + +S + Y P
Sbjct: 335 GDEAHKFMGRPRLER--ADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVR 392
Query: 515 LPYNSKMCFG 486
+PY K FG
Sbjct: 393 IPYQQKRMFG 402
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 572 GYGQRNSRGQRLADFLEKEGLYMMNSFFPEAASQEMDLDESRRCNQ 709
G G+ RG+R AD EK G+Y+ ++ + + + D+ + N+
Sbjct: 228 GRGRDGGRGRRSADMEEKHGIYLGDNADGDRLQKRLGEDKMKIFNE 273
>11_01_0796 - 7000747-7001193
Length = 148
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 19 AAGGGVGGAKNPRQRHGYH 75
AA GG GG ++P +H YH
Sbjct: 118 AAKGGAGGCQHPLSQHHYH 136
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -2
Query: 695 GTHPGPFPVRRLLERKNSSYRVLLSPESRPTSVLWSSAAHIQTDPLST 552
G + P V+ L +Y VL++ + P+ W+++ + DP T
Sbjct: 265 GYYVTPVVVKNLFIYSGETYSVLVTADQDPSRSYWAASHVVSRDPTKT 312
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 652 ERIHHIESFFLQKVGQPLSSGVPLPISKLTHFQLII 545
E ++H + + QPLS VP+P S++ ++++I
Sbjct: 280 ELLYHFGWTKMDEARQPLSRKVPIPSSQINPYRMVI 315
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 136 EKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQ 237
E + E +EE+++LR D++ L E+ R+ D + Q
Sbjct: 1055 ELMGERDEELEELRNDIVDLKEMYREQVDLLVSQ 1088
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,688,698
Number of Sequences: 37544
Number of extensions: 543097
Number of successful extensions: 2308
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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