Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0585
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 51 9e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 50 2e-06
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 48 7e-06
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 37 0.012
Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p... 29 4.4
Z81547-2|CAB04460.1| 209|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical pr... 28 7.6
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 50.8 bits (116), Expect = 9e-07
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Frame = +3
Query: 282 GGVGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQTHPDDEVEALYE 461
GGVGFIV +L + ++++++ VIQVYAPT DE+ YE
Sbjct: 23 GGVGFIVKSTLLPRITEVVFIDYRIGLITFKVNRKWKCTVIQVYAPTAVSTLDEISDFYE 82
Query: 462 DVSRAIHSSKTHFTVVWETLMQSWVVEAMMS*KWVSLD-MGSGTPEDRGWPTFWRKKDSI 638
+ H+ ++ + ++ + +++ M TF
Sbjct: 83 KLEDTYHACRSKYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILATFCESNRLW 142
Query: 639 **ILSFQKPPHRKWTWMSPDGVTKN 713
F KP +R+WT +SPDG+ K+
Sbjct: 143 HINSQFYKPINRRWTHVSPDGMFKH 167
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Frame = +2
Query: 485 LQNTFYCC-------MGDFNAKLGCRSND-ELKVGQFGYGQRNSRGQRLADFLEKEGLYM 640
L++T++ C +GDFNA++G R ++ E +G RN G+ LA F E L+
Sbjct: 84 LEDTYHACRSKYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILATFCESNRLWH 143
Query: 641 MNSFF 655
+NS F
Sbjct: 144 INSQF 148
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 50.0 bits (114), Expect = 2e-06
Identities = 37/150 (24%), Positives = 57/150 (38%)
Frame = +3
Query: 252 LYREGEQKSQGGVGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQTH 431
L + E GGVGFIV +L L ++S++++ VIQVYAPT
Sbjct: 169 LGKRNESSVSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADS 228
Query: 432 PDDEVEALYEDVSRAIHSSKTHFTVVWETLMQSWVVEAMMS*KWVSLDMGSGTPEDRGWP 611
+E+ Y+ V ++ + +V M
Sbjct: 229 DLEEICDFYDSVEDVFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLA 288
Query: 612 TFWRKKDSI**ILSFQKPPHRKWTWMSPDG 701
TF F+KP H++WT++SPDG
Sbjct: 289 TFCETNRLWHTNSMFKKPMHKRWTFVSPDG 318
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 509 MGDFNAKLGCRSNDELKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFF 655
+GDFNA++GCR N+E +G RN G+ LA F E L+ NS F
Sbjct: 255 IGDFNARMGCRQNNERYIGPHAMEPRNDTGELLATFCETNRLWHTNSMF 303
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +2
Query: 509 MGDFNAKLGCRSNDELKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFF 655
+GDFNA++GCR N+E +G RN G+ L F E L+ NS F
Sbjct: 84 IGDFNARMGCRQNNERYIGPHAMEPRNDTGELLTTFCETNRLWHTNSMF 132
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/141 (21%), Positives = 52/141 (36%)
Frame = +3
Query: 279 QGGVGFIVHKSLXXXXXXXXXXXXXXACLILRISKRYSLKVIQVYAPTQTHPDDEVEALY 458
+G ++V +L L ++S++++ VIQVYAPT +E+ Y
Sbjct: 7 EGSASYVVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADLDLEEICDFY 66
Query: 459 EDVSRAIHSSKTHFTVVWETLMQSWVVEAMMS*KWVSLDMGSGTPEDRGWPTFWRKKDSI 638
+ V ++ + +V M TF
Sbjct: 67 DSVEDVFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLTTFCETNRLW 126
Query: 639 **ILSFQKPPHRKWTWMSPDG 701
F+KP H++WT++SPDG
Sbjct: 127 HTNSMFKKPMHKRWTFVSPDG 147
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 530 LGCRSNDELKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFF 655
+GCR N+E +G RN G+ LA F E L+ NS F
Sbjct: 1 MGCRQNNERYIGPHAMEPRNDTGELLATFCETNRLWHTNSMF 42
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +3
Query: 654 FQKPPHRKWTWMSPDG 701
F+KP H++WT++SPDG
Sbjct: 42 FKKPMHKRWTFVSPDG 57
>Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical
protein C07A4.2 protein.
Length = 417
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 637 IESFFLQKVGQPLSSGVPLPISKLTHF-QLIIASTTQLCIKVSHTTVKCVLELCM 476
I+SF+L+ +G SS P+ K HF QLI ++ ++ + VS + C+
Sbjct: 327 IQSFYLEGIGYNYSSWRPMSFFKTGHFTQLIWKNSRKIGVGVSIVKSSSIRSPCV 381
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 133 DEKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQSGHLFFTERESR 273
DEK ELE++ D+ DV ++E+++ E I L+S L ERE +
Sbjct: 350 DEKREELEKQRDEALEDVRRITELKKNVE--IELRSLKLLAEEREEQ 394
>AF039049-12|AAB94245.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 35B3 protein.
Length = 499
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 378 SKRYSLKVIQVYAPTQTHPDDEVEALYEDVSRAIHS-SKTHFTV 506
SKRY + Y P+ P D VEA + + + THFT+
Sbjct: 252 SKRYDKMKLGEYTPSSEDPQDFVEAFLAKIDQEEQTGGPTHFTM 295
>Z81547-2|CAB04460.1| 209|Caenorhabditis elegans Hypothetical
protein F53F8.3 protein.
Length = 209
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 124 LRLDEKLVELEEEMDKLRWDVIGLSEIRRQGEDTITLQSGHLFFTERESRSPK 282
LRL + +L+ E++KL+ D LS + + T+Q H+ RE+ S K
Sbjct: 29 LRLTAENEKLKSEVEKLKKDHEELSRVTLKVNTEFTIQESHMARLLRENMSLK 81
>Z74045-3|CAA98551.1| 165|Caenorhabditis elegans Hypothetical
protein T27F2.4 protein.
Length = 165
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +1
Query: 22 AGGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTLRLDEKLVELEEEMDKLRWDVIGLSE 201
A G ++ R R Y Q R + NV++L DEK +LE E+ LR V GL +
Sbjct: 87 ADGQDAHSQKKRHRRLYARQYRAQMRQKVENVKSLH-DEK-EQLELEVKALRQAVSGLQQ 144
Query: 202 IRRQGEDTITL 234
Q + I++
Sbjct: 145 ENAQKDFLISI 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,313,639
Number of Sequences: 27780
Number of extensions: 413009
Number of successful extensions: 1256
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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