Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0585
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.94 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.94 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.8  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 418 PLRHTQTMR*KLCMRTSVGPYI 483
           PL ++  M  +LC++  VGPY+
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYV 30


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 418 PLRHTQTMR*KLCMRTSVGPYI 483
           PL ++  M  +LC++  VGPY+
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYV 29


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +1

Query: 94  LALVTHNVRTLRLDEKLVELEEEM---DKLRWDVI--GLSEIRRQGEDTI 228
           LAL    +++ +L+E + +L+EEM   D+L + +I   +++  R GE+ I
Sbjct: 365 LALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMIPKQVADRLRNGENPI 414


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 696 RDSSRSISCEAASGKKEFII*SPSFSRKSANL 601
           R+S  S+ C AASG + F I   S   K   L
Sbjct: 15  RESRCSVRCSAASGLRWFEIWRDSLPTKMREL 46


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 44  APPTPPPAARG 12
           APP PPP++ G
Sbjct: 342 APPPPPPSSSG 352


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 590 SSAAH-IQTDPLSTHHCFYNPALH 522
           + A+H IQ    S HHC +N  +H
Sbjct: 9   ADASHCIQQILESVHHCHHNGVVH 32


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 554 LKVGQFGYGQRNSRGQRLADFLEKEGLYMMNSFFPEAASQEMDL 685
           L V  FG G+R   G+R  D   +  L  +   F     +E+DL
Sbjct: 454 LLVAPFGAGRRICPGKRFVDLALQLILAKIIREFEIIVEEELDL 497


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 385 RFDILSIRHATLFETLPTDTMLFTRDLWTIKPTP 284
           RF+   IR A   ETL     +F + + +  PTP
Sbjct: 390 RFEPPQIRQAFAEETLQPGPSMFLKCVASGNPTP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,225
Number of Sequences: 438
Number of extensions: 5514
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)