Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0585
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 0.76
At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-contain... 30 1.8
At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-contain... 30 1.8
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 30 1.8
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 30 1.8
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 29 2.3
At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl... 29 2.3
At2g42560.1 68415.m05267 late embryogenesis abundant domain-cont... 28 5.3
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ... 28 5.3
At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphat... 28 7.1
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 28 7.1
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 28 7.1
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 28 7.1
At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase fa... 27 9.3
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 27 9.3
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 27 9.3
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.1 bits (67), Expect = 0.76
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 7 WIPRAAGGGVGGAKNPRQ-RHGYHPQK-RRPLALVTH 111
WIPR GGG+GG K Q R G + R PL + H
Sbjct: 148 WIPRRLGGGLGGRKESGQLRFGGRDRPFRAPLRPIPH 184
>At5g19390.2 68418.m02311 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 870
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 128 GWTRSLSSWKKRWTSCAGTSLVYQKSE 208
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At5g19390.1 68418.m02310 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to rho-GTPase activating protein [Homo
sapiens] GI:14245732; contains Pfam profiles PF00169: PH
domain, PF00620: RhoGAP domain
Length = 822
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 128 GWTRSLSSWKKRWTSCAGTSLVYQKSE 208
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 128 GWTRSLSSWKKRWTSCAGTSLVYQKSE 208
GWT SWKKRW TSLV+ K++
Sbjct: 33 GWT----SWKKRWFILTRTSLVFFKND 55
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 128 GWTRSLSSWKKRWTSCAGTSLVYQKSE 208
GWT SWKKRW TSLV+ +S+
Sbjct: 75 GWT----SWKKRWFILTRTSLVFFRSD 97
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 510 WETLMQSWVVEAMMS*KWVSLDMGS-GTPEDRGWPTFWRK 626
W +++ W KW+ D G G P ++ W ++W K
Sbjct: 1621 WHEIVEDWADWK----KWIEYDNGGIGVPPEKSWESWWEK 1656
>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
chloroplast, temperature-sensitive (FAD8) identical to
SP:48622 Temperature-sensitive omega-3 fatty acid
desaturase, chloroplast precursor (EC 1.14.19.-)
{Arabidopsis thaliana}; contains Pfam profile PF00487:
Fatty acid desaturase; identical to cDNA plastid fatty
acid desaturase GI:1030694
Length = 435
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 182 TSLVYQKSEDRERIR*PCSPATCSLPRGRAEVPRWCWFYRPQVS 313
T+L ED ER P +P +L RA +P+ CW P +S
Sbjct: 68 TTLQSPSEEDTERFD-PGAPPPFNLADIRAAIPKHCWVKNPWMS 110
>At2g42560.1 68415.m05267 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to LEA protein [Glycine max]
GI:1389897; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 635
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 19 AAGGGVGGAKNPRQRHGYHPQKRRPLALVTHNVRTLR 129
A GGG GG + HG+H +K R L+ +R
Sbjct: 175 AVGGGGGGEEKESGVHGFHGEKARHAELLAAGGEEMR 211
>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1923
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 558 KWVSLDMGSGTPEDRGWPTFWRKK 629
KW+S G G P ++ W ++W ++
Sbjct: 1697 KWISSRGGIGVPANKSWESWWEEE 1720
>At3g10620.1 68416.m01277 diadenosine 5',5'''-P1,P4-tetraphosphate
hydrolase, putative similar to diadenosine
5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus
angustifolius] GI:1888557, [Hordeum vulgare subsp.
vulgare] GI:2564253; contains Pfam profile PF00293:
NUDIX domain
Length = 216
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 657 QKPPHRKWTWMSPDGVTKN 713
+KP +W+W SPD V +N
Sbjct: 177 EKPEFGEWSWTSPDQVVEN 195
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 510 WETLMQSWVVEAMMS*KWVSLDMGSGTPEDRGWPTFWRKK 629
W+ ++ W KW+ G G P ++ W ++W K+
Sbjct: 1719 WQKIVDDWTDWN----KWIYNRGGIGVPPEKSWESWWEKE 1754
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 56 RGFLAPPTPPPAARG 12
+G APP PPP ARG
Sbjct: 271 KGVAAPPPPPPGARG 285
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
synthase 1 nearly identical to callose synthase 1
catalytic subunit [Arabidopsis thaliana] GI:13649388
Length = 1922
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 510 WETLMQSWVVEAMMS*KWVSLDMGSGTPEDRGWPTFWRKK 629
W+ ++ W KW+ G G P ++ W ++W K+
Sbjct: 1682 WQKIVDDWTDWN----KWIYNRGGIGVPPEKSWESWWEKE 1717
>At2g31830.1 68415.m03887 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 4
WD-40 repeats (PF00400);similar to SP:Q01968 Inositol
polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's
oculocerebrorenal syndrome protein) (SP:Q01968) [Homo
sapiens]
Length = 1144
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 518 SLPYNSKMCFGAMYGPTDVLIQSFYLIVWVCLSGSV 411
S P+ ++ + A GP + ++ S Y +W C G V
Sbjct: 258 SKPFKERLSWQAHRGPVNYIVISSYGDMWSCSDGGV 293
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 100 LVTHNVRTLRLDEKLVELEEEMDKLRWDV 186
L++H+VRTLRL +KL +L + D + D+
Sbjct: 166 LLSHSVRTLRLSKKLRDLADFPDPDKIDL 194
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 68 PCLCRGFLAPPTPPPAARG 12
P +G APP PPPA RG
Sbjct: 755 PLGAKGSNAPPPPPPAGRG 773
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,081
Number of Sequences: 28952
Number of extensions: 396153
Number of successful extensions: 1158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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