Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0584
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 130 4e-29
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther... 62 1e-08
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 56 8e-07
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 49 1e-04
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 43 0.008
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 42 0.011
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 38 0.31
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 37 0.55
UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup... 33 5.1
UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2; Rhodob... 33 6.7
UniRef50_UPI0000E80D03 Cluster: PREDICTED: similar to tumor prot... 33 8.9
UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6 N-ter... 33 8.9
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 130 bits (313), Expect = 4e-29
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = -3
Query: 696 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVA 517
DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRK+MKS S+RYFDKAMRHDNRLIVA
Sbjct: 838 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVA 897
Query: 516 AAD 508
AAD
Sbjct: 898 AAD 900
Score = 83.4 bits (197), Expect = 5e-15
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -2
Query: 508 YSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSNT 395
YSPNPDHAGASHRRRPRHVLTDPSDPIT ALD FSSNT
Sbjct: 901 YSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNT 938
>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
mylitta|Rep: Reverse transcriptase-like - Antheraea
mylitta (Tasar silkworm)
Length = 186
Score = 62.5 bits (145), Expect = 1e-08
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVAAA 511
LQ Q+R R G PW++R VDLH +L + SI Y+KS + YF+KA H + L+V+AA
Sbjct: 51 LQVFQNRVLRKVTGTPWYIRRVDLHRNLEIPSIWTYVKSLTISYFEKAANHPSPLVVSAA 110
Query: 510 D 508
+
Sbjct: 111 N 111
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 508 YSPNPDHAGASHRRRPRHVLTDPSDPITFALDAF 407
Y P P+ A RRRPRH+ DP D IT D +
Sbjct: 112 YQPVPN--AARPRRRPRHIFIDPPDEITAVNDQY 143
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 56.0 bits (129), Expect = 8e-07
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVA-- 517
+Q++Q++ RL G WFVRN LH DL L ++ + S RY D+ RH NRL A
Sbjct: 821 IQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALN 880
Query: 516 AADTPRILIMQEP 478
+ PR L ++P
Sbjct: 881 RSRPPRRLNRRQP 893
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -3
Query: 696 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
D +Q QSR R+ GAPW++RN ++H DL ++ + + + +Y +K H N L
Sbjct: 810 DIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 42.7 bits (96), Expect = 0.008
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
+Q LQ+R R P++VR LH DL L ++ + + + RY D+ RH + L
Sbjct: 827 IQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 42.3 bits (95), Expect = 0.011
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTS 568
LQ+ Q++F R A APWFVRN LH ++ + ++ ++ + T+
Sbjct: 1294 LQTFQNKFLRQAFNAPWFVRNNQLHREVKMPTMEEFFRETA 1334
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 37.5 bits (83), Expect = 0.31
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
++ LQ++ R GAPW++R D+ DL + + +++ +++Y ++ H N L
Sbjct: 826 IRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSL 880
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 36.7 bits (81), Expect = 0.55
Identities = 14/59 (23%), Positives = 33/59 (55%)
Frame = -3
Query: 684 SLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVAAAD 508
++Q++ R APWF+RN +L DL + +++ ++K ++ + ++ +N + D
Sbjct: 418 TVQNKIIRQISNAPWFIRNKNLEKDLKIPNLKDFIKKLNQDFANRTGTSNNPSLTYTID 476
>UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1103
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = -3
Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLI 523
+Q++++++ R + A + R D+ ++S + S+RY + H+N LI
Sbjct: 885 IQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLI 940
>UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2;
Rhodobacteraceae|Rep: ComEC/Rec2-related protein -
Jannaschia sp. (strain CCS1)
Length = 706
Score = 33.1 bits (72), Expect = 6.7
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 121 PEGLSSFTRTGGRAKAQPRGVGFANNCPSASEGTLTTQE 237
P GL T GRA ++PRG GF ++G L TQE
Sbjct: 540 PGGLVGLTTDQGRALSRPRGDGFVAGIWLENDGDLITQE 578
>UniRef50_UPI0000E80D03 Cluster: PREDICTED: similar to tumor protein
p53 binding protein, 1; n=1; Gallus gallus|Rep:
PREDICTED: similar to tumor protein p53 binding protein,
1 - Gallus gallus
Length = 1902
Score = 32.7 bits (71), Expect = 8.9
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +1
Query: 142 TRTGGRAKAQPRGVGFANNCPSASEGTLTTQEQLFRE*STTGSESRPAEK 291
TR G+A PRG G PS S GT + + + STTGS P EK
Sbjct: 1324 TRQSGKAPGTPRGRGRRGRPPSRSTGTRYSGIPVVEDLSTTGS---PEEK 1370
>UniRef50_UPI00005A604F Cluster: PREDICTED: similar to USP6
N-terminal like; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to USP6 N-terminal like - Canis
familiaris
Length = 752
Score = 32.7 bits (71), Expect = 8.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 244 FRE*STTGSESRPAEKIRRETQRADAWVRL 333
+R+ G R A+K+R+ET RAD W+++
Sbjct: 9 YRDKELPGPSPREAKKLRQETPRADKWIKM 38
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,495,646
Number of Sequences: 1657284
Number of extensions: 12370560
Number of successful extensions: 29930
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 28860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29924
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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