Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0584
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    31   1.2  
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204           29   4.7  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   8.2  

>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 591 ELIRGPSRRVGQRSSRTTEPRQLTCKSGIVG 683
           E++R P R +G+   R T   QL C  G +G
Sbjct: 20  EIMRSPRRTIGENGYRDTRHHQLKCSDGNLG 50


>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
          Length = 403

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = -3

Query: 657 AVGAPWFVRNVDL--HDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVAAADTPRILIMQ 484
           + G  W +  +    HD   LE+ +K+  +    Y      + N L  A  DT  +    
Sbjct: 107 SAGGVWILGKLGFLCHDPFNLENAKKFAPAAIVFYL-AIFTNTNLLYHANVDTFIVFRSL 165

Query: 483 EPVTVDALDTSLRIHQIQ*PLH*MPSALILGAGLGTPVT 367
            P+ V   DT+ R       L  +   +ILG  +G  +T
Sbjct: 166 TPLLVAIADTAFRKQPCPSKLTFLSLVVILGGAVGYVIT 204


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 502 PNPDHAGASHRRRPRHVLTDPSDPITF 422
           PNP  A  SH +   HV + P  P+ F
Sbjct: 136 PNPQPAYMSHPKPNPHVFSSPCSPVVF 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,841,992
Number of Sequences: 37544
Number of extensions: 372387
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)