Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0584
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   8.4  
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   28   8.4  

>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 697 RHPPIPTIPLLQVSC 653
           RHPPI  IPLLQ  C
Sbjct: 287 RHPPITDIPLLQTPC 301


>SB_18164| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 854

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 290 FSAGRDSDPVVDHSRNNCS*VVRVPSEALGQLLANPTPLG*AFARPPVLVKLERPSGHQ 114
           F AG   +P+  H  +     V  P++ LGQ   +P        R  V ++L+RP G Q
Sbjct: 453 FEAGEVREPIGGHLAD----YVDCPNKHLGQTFRHPDVQARGCIRHEVSLRLQRPLGRQ 507


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 290 FSAGRDSDPVVDHSRNNCS*VVRVPSEALGQLLANPTPLG*AFARPPVLVKLERPSGHQ 114
           F AG   +P+  H  +     V  P++ LGQ   +P        R  V ++L+RP G Q
Sbjct: 558 FEAGEVREPIGGHLAD----YVDCPNKHLGQTFRHPDVQARGCIRHEVSLRLQRPLGRQ 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,316,443
Number of Sequences: 59808
Number of extensions: 381942
Number of successful extensions: 968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)