Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0584
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    56   5e-08
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    49   7e-06
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    49   7e-06
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    43   5e-04
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    39   0.006
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    38   0.017
AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p pro...    38   0.017
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    33   0.28 
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    33   0.28 
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    33   0.28 
AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein ...    33   0.37 
AY565953-1|AAS74963.1|  288|Drosophila melanogaster 5-HT2 protein.     30   3.5  

>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown protein.
          Length = 908

 Score = 56.0 bits (129), Expect = 5e-08
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -3

Query: 690  LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVA-- 517
            +Q++Q++  RL  G  WFVRN  LH DL L ++   +   S RY D+  RH NRL  A  
Sbjct: 821  IQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALN 880

Query: 516  AADTPRILIMQEP 478
             +  PR L  ++P
Sbjct: 881  RSRPPRRLNRRQP 893


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = -3

Query: 696 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
           D +Q  QSR  R+  GAPW++RN ++H DL ++ + + +     +Y +K   H N L
Sbjct: 810 DIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 33/57 (57%)
 Frame = -3

Query: 696 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
           D +Q  QSR  R+  GAPW++RN ++H DL ++ + + +     +Y +K   H N L
Sbjct: 810 DIIQRAQSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
           +Q LQ+R  R     P++VR   LH DL L ++ + +   + RY D+  RH + L
Sbjct: 827 IQVLQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 696 DTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRY 559
           D +Q  QS+  R   GAPW+VR+ ++  DL + S+   +    ++Y
Sbjct: 812 DIIQRAQSKILRTITGAPWYVRSENIQRDLNIPSVTNAITELKEKY 857


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
           D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 37.5 bits (83), Expect = 0.017
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = -3

Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
           ++ LQ++  R   GAPW++R  D+  DL +  +   +++ +++Y ++   H N L
Sbjct: 826 IRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSL 880


>AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p
           protein.
          Length = 718

 Score = 37.5 bits (83), Expect = 0.017
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = -3

Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRL 526
           ++ LQ++  R   GAPW++R  D+  DL +  +   +++ +++Y ++   H N L
Sbjct: 628 IRILQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPNSL 682


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 690  LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLI 523
            +Q++++++ R  + A  + R  D+     ++S  +     S+RY +    H+N LI
Sbjct: 885  IQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLI 940


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 690  LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLI 523
            +Q++++++ R  + A  + R  D+     ++S  +     S+RY +    H+N LI
Sbjct: 885  IQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLI 940


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
            protein.
          Length = 1103

 Score = 33.5 bits (73), Expect = 0.28
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 690  LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLI 523
            +Q++++++ R  + A  + R  D+     ++S  +     S+RY +    H+N LI
Sbjct: 885  IQTMENKYIRRIINASRYTRQADIRTKYNIKSFDEIFDKASQRYANSLTDHENPLI 940


>AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein
           protein.
          Length = 656

 Score = 33.1 bits (72), Expect = 0.37
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = -3

Query: 690 LQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLI 523
           +Q++++++ R  + A  + R  D+     ++S  +     S+RY +    H+N LI
Sbjct: 438 IQTMENKYIRRIINASRYTRQADIRTKYNIKSFDETFDKASQRYANSLTDHENPLI 493


>AY565953-1|AAS74963.1|  288|Drosophila melanogaster 5-HT2 protein.
          Length = 288

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +2

Query: 446 RKDVSRASTVTGSCMIRIRGVSAAATIRRLS*RIALSKYRFDVDFMYFRIDSRPKSSCRS 625
           ++  SR S  T S    + G S AA   R +   A S +RF    ++    S P SSC S
Sbjct: 208 QRTASRRSMGTVSFRNVVNGTSGAAGSGRRTTGTAHSSFRFSGAGIFRHSSSSPASSCHS 267

Query: 626 T 628
           T
Sbjct: 268 T 268


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,321,250
Number of Sequences: 53049
Number of extensions: 598790
Number of successful extensions: 1459
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)