Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0584
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa...    29   3.9  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    28   6.8  
At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative              27   9.0  
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc...    27   9.0  
At3g02860.2 68416.m00279 expressed protein                             27   9.0  
At3g02860.1 68416.m00278 expressed protein                             27   9.0  

>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
           profiles PF00085: Thioredoxin, PF00515: TPR Domain;
           similar to tetratricopeptide repeat protein 2
           (GI:7248701) [Drosophila melanogaster]; similar to DnaJ
           homolog subfamily C member 7 (Tetratricopeptide repeat
           protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
           [Homo sapiens]
          Length = 699

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 127 GLSSFTRTGGRAKAQPRGVGFANNCP------SASEGTLTTQEQLFRE*STTGSESRPAE 288
           G  S  R GG + A+P   G  +N P      S S  T+ T E    + +  GS+S   +
Sbjct: 172 GHGSIMRGGGISPAKPTNTGGGSNSPVNVGSSSRSSSTVATGETPIWKKAILGSDSEEVK 231

Query: 289 KIRRETQR 312
           ++  E  R
Sbjct: 232 RVGNEMYR 239


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 606 GLESIRKYMKSTSKRYFDKAMRHDNRLIVAAADT 505
           GLE   K + ST +++ D  +R++ RL+  A D+
Sbjct: 175 GLEHFGKALGSTQRKFEDGLLRNEQRLVGEALDS 208


>At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative
          Length = 268

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = -3

Query: 684 SLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKYMKSTSKRYFDKAMRHDNRLIVAAADT 505
           SL  R CR+     +   N+D  D+L  +SI K    T K Y    +    R +V  A  
Sbjct: 88  SLLCRTCRIKSHVVFCFGNIDKVDELSEDSI-KAATDTGKAYVHGFLDVKGRPVVIVAPA 146

Query: 504 PRILIMQEPVTVDAL 460
             I  + +P+  + L
Sbjct: 147 KHIPGLLDPIEDEKL 161


>At3g52600.1 68416.m05794 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase [Daucus carota] GI:18324
          Length = 590

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 505 SPNPDHAGASHRRRPRHVLTDPSDPITF 422
           S +P H  A H + PRH + DP+ P+ +
Sbjct: 42  SVSPLHRTAYHFQPPRHWINDPNAPMLY 69


>At3g02860.2 68416.m00279 expressed protein
          Length = 313

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 172 PRGVGFANNCPSASEGTLTTQEQLFRE*STTGSESRP 282
           P   GF +N  + S  T TT E    +  TTG E++P
Sbjct: 144 PLPAGFFDNQKTDSSNTKTTSEPKQSQTQTTGPETKP 180


>At3g02860.1 68416.m00278 expressed protein
          Length = 312

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 172 PRGVGFANNCPSASEGTLTTQEQLFRE*STTGSESRP 282
           P   GF +N  + S  T TT E    +  TTG E++P
Sbjct: 143 PLPAGFFDNQKTDSSNTKTTSEPKQSQTQTTGPETKP 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,123
Number of Sequences: 28952
Number of extensions: 267345
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)