Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0583
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.38 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.38 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.38 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 662 FLRMFKYILINFC*QCPIMALTVWLQTWL 576
           F R F Y LI     C ++ +  W+  WL
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 662 FLRMFKYILINFC*QCPIMALTVWLQTWL 576
           F R F Y LI     C ++ +  W+  WL
Sbjct: 237 FKREFSYYLIQIYIPCCMLVIVSWVSFWL 265


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 204 SFRTKSYRVRCEKMYSSLKPDERISFEVFLPIY 302
           ++   +Y   C+K+Y ++   E+I   V +PIY
Sbjct: 99  NYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIY 131


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 644 YILINFC*QCPIMALTVWLQTWLVY 570
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 644 YILINFC*QCPIMALTVWLQTWLVY 570
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 219 SYRVRCEKMYSSLKPDERISFEVFLPIY 302
           +Y   C+K+Y ++   E+I   V +PIY
Sbjct: 346 NYNNNCKKLYYNIINIEQIPVPVPVPIY 373


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 644 YILINFC*QCPIMALTVWLQTWLVY 570
           Y+++ FC  C      V+  TWL Y
Sbjct: 347 YVIVPFCPDCCPSDRMVYFITWLGY 371


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 130 QEAFQLFDS-RGDGKIHVAQIGDAL 201
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 130 QEAFQLFDS-RGDGKIHVAQIGDAL 201
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 386 THCHLCQNGADPQ*SH*QCR 327
           T C  C+ G  P  +H  CR
Sbjct: 624 TQCISCRQGTVPDETHSACR 643


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,878
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)