Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0582
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.84 
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   2.6  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.8  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -3

Query: 284  RGFEFRQRKILYDKYKCLFQGYGCILKYMYVYNKNLTFI------SDIWYL*HRFFTNLS 123
            RG  + Q ++L+  Y+   +G  CI   + +    L  +       D WY     F++L+
Sbjct: 1058 RGLYYAQSQVLFGYYRSRLKGSRCINDLLVIIKYFLLDLYLNPRRQDSWYTCSSVFSSLA 1117

Query: 122  RDQLTW 105
             ++L W
Sbjct: 1118 DEELGW 1123


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 277 SNSAKGRYCMININVFSRVMDV-Y*NICMCIIKILHLFPISGTCNTGSLRTYHG 119
           SNS    Y M+N+    R+ ++ Y NIC+       L   +  C  G +  +HG
Sbjct: 8   SNSFSFLYLMVNVQC--RIKEIMYWNICLYWDVFSKLIIYNKVCQFGRIHIFHG 59


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 265 KGRYCMININVFSRVMDVY*NICMCIIKIL 176
           K   C ++ +V+  ++ +  NIC CI+K L
Sbjct: 94  KSVLCSLDESVYPNLLPLTANICPCILKAL 123


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 545 KLLRVMSDAIRRNLHPNDNFVTEKT 471
           KL    +  + + + PN+NFV +KT
Sbjct: 174 KLNNFFTKGVEKRIAPNENFVADKT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,939
Number of Sequences: 5004
Number of extensions: 62682
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)