Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0582
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0994 + 33653055-33653144,33653219-33653310,33653483-336535...    32   0.50 
01_06_0995 + 33661367-33661380,33661729-33661826,33662059-336622...    30   1.5  
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688...    29   4.7  

>01_06_0994 +
           33653055-33653144,33653219-33653310,33653483-33653580,
           33653758-33653913,33654009-33654628,33654721-33654794,
           33654905-33655156,33655250-33655367,33655468-33655639,
           33655729-33656270
          Length = 737

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 423 SPPGVKWLLEP-IDIYD-VNAPHTLRHKF*GLSIVWCSGK*QGPYTRGS 283
           SPPGVK ++EP + ++D  N  HT +  F   S +W   K QG YT GS
Sbjct: 667 SPPGVKMVVEPSVLVFDAANKVHTFKVSF---SPLW---KLQGDYTFGS 709


>01_06_0995 +
           33661367-33661380,33661729-33661826,33662059-33662214,
           33663307-33663926,33664020-33664090,33664176-33664427,
           33664494-33664611,33664715-33664886,33664970-33665511
          Length = 680

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 420 PPGVKWLLEP-IDIYD-VNAPHTLRHKF*GLSIVWCSGK*QGPYTRGS 283
           PPGVK ++EP + ++D  N  HT +  F   S +W   K QG YT GS
Sbjct: 611 PPGVKMVVEPSVLVFDAANKVHTFKVSF---SPLW---KLQGDYTFGS 652


>01_06_0996 +
           33667663-33667900,33668019-33668091,33668785-33668841,
           33668970-33669067,33669482-33669637,33669744-33670366,
           33670484-33670560,33671551-33671805,33671950-33672067,
           33672174-33672345,33672434-33672975
          Length = 802

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 423 SPPGVKWLLE-PIDIYD-VNAPHTLRHKF*GLSIVWCSGK*QGPYTRGS 283
           SPPGVK  +E P+ +++  N  HT + K   LS +W   K QG YT GS
Sbjct: 732 SPPGVKMDVEPPVLVFNAANKVHTFQVK---LSPLW---KLQGDYTFGS 774


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,187,704
Number of Sequences: 37544
Number of extensions: 369433
Number of successful extensions: 622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)