Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0582
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY437926-1|AAR24077.1|  924|Drosophila melanogaster AMO protein.       29   8.0  
AY283154-1|AAQ18122.1|  924|Drosophila melanogaster polycystin-2...    29   8.0  
AY119565-1|AAM50219.1|  637|Drosophila melanogaster HL01076p pro...    29   8.0  
AE014297-1438|AAF54736.1|  637|Drosophila melanogaster CG3132-PA...    29   8.0  
AE014134-2193|AAF53183.2|  924|Drosophila melanogaster CG6504-PA...    29   8.0  

>AY437926-1|AAR24077.1|  924|Drosophila melanogaster AMO protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 259 RYCMININVFSRVMDVY*NICMCIIKILHLFPISGTCNTGSLRT---YHGTS*RGVIVSK 89
           R C++  N+F+   D++ +I +    I  + P  G      L+T   Y   + R ++++ 
Sbjct: 535 RLCLVEFNLFNENTDIFQSIKL----IAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTV 590

Query: 88  IFIYLYIIYIVTT 50
           I+I+ YI+ I  T
Sbjct: 591 IYIFWYIMVIYHT 603


>AY283154-1|AAQ18122.1|  924|Drosophila melanogaster polycystin-2
           protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 259 RYCMININVFSRVMDVY*NICMCIIKILHLFPISGTCNTGSLRT---YHGTS*RGVIVSK 89
           R C++  N+F+   D++ +I +    I  + P  G      L+T   Y   + R ++++ 
Sbjct: 535 RLCLVEFNLFNENTDIFQSIKL----IAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTV 590

Query: 88  IFIYLYIIYIVTT 50
           I+I+ YI+ I  T
Sbjct: 591 IYIFWYIMVIYYT 603


>AY119565-1|AAM50219.1|  637|Drosophila melanogaster HL01076p
           protein.
          Length = 637

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 178 RFLLYTYIYFNIHP*PWKRHL 240
           RF+  ++ YF  HP  W+RHL
Sbjct: 41  RFIAGSFHYFRAHPATWQRHL 61


>AE014297-1438|AAF54736.1|  637|Drosophila melanogaster CG3132-PA
           protein.
          Length = 637

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 178 RFLLYTYIYFNIHP*PWKRHL 240
           RF+  ++ YF  HP  W+RHL
Sbjct: 41  RFIAGSFHYFRAHPATWQRHL 61


>AE014134-2193|AAF53183.2|  924|Drosophila melanogaster CG6504-PA
           protein.
          Length = 924

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 259 RYCMININVFSRVMDVY*NICMCIIKILHLFPISGTCNTGSLRT---YHGTS*RGVIVSK 89
           R C++  N+F+   D++ +I +    I  + P  G      L+T   Y   + R ++++ 
Sbjct: 535 RLCLVEFNLFNENTDIFQSIKL----IAEIPPTGGVIPQAHLQTVKMYSFFTDRSMLMTV 590

Query: 88  IFIYLYIIYIVTT 50
           I+I+ YI+ I  T
Sbjct: 591 IYIFWYIMVIYYT 603


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,139,578
Number of Sequences: 53049
Number of extensions: 658220
Number of successful extensions: 1159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)