Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0582
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium) v...    27   9.7  
U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium) v...    27   9.7  
U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium) v...    27   9.7  
AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.      27   9.7  
AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.      27   9.7  

>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 591 LYFIGLFQFPVR*INCYQSLFSTALRLE 674
           LY IG+F FP+     Y  LF T++ ++
Sbjct: 16  LYTIGMFSFPIHLFGAYCILFRTSIAMK 43


>U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           c protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 456 KNLCVCFFCYEIIIRMQISPNR 521
           + +C+ +F  E I+R+ ++PNR
Sbjct: 280 ETVCIIWFTVEFIVRLAVTPNR 301


>U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           b protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 456 KNLCVCFFCYEIIIRMQISPNR 521
           + +C+ +F  E I+R+ ++PNR
Sbjct: 285 ETVCIIWFTVEFIVRLAVTPNR 306


>U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           a protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 456 KNLCVCFFCYEIIIRMQISPNR 521
           + +C+ +F  E I+R+ ++PNR
Sbjct: 280 ETVCIIWFTVEFIVRLAVTPNR 301


>AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 456 KNLCVCFFCYEIIIRMQISPNR 521
           + +C+ +F  E I+R+ ++PNR
Sbjct: 280 ETVCIIWFTVEFIVRLAVTPNR 301


>AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 456 KNLCVCFFCYEIIIRMQISPNR 521
           + +C+ +F  E I+R+ ++PNR
Sbjct: 280 ETVCIIWFTVEFIVRLAVTPNR 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,283
Number of Sequences: 27780
Number of extensions: 345194
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)