Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0580
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.0  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 232 SEAASNRPDPAQEMPELDGRPIRREVR 152
           S  A   P P QE+P+L+ +P+   ++
Sbjct: 245 SHPAIVTPGPKQELPDLNHKPLNLTIK 271


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 232 SEAASNRPDPAQEMPELDGRPIRREVR 152
           S  A   P P QE+P+L+ +P+   ++
Sbjct: 137 SHPAIVTPGPKQELPDLNHKPLNLTIK 163


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 249 SRGPQCEVCCMGLPPLGRSW*ATGEVGARGRP 344
           S G       +GLP  GR+W    E    G P
Sbjct: 285 SNGAPSAKIVLGLPTFGRAWAMDDESDINGTP 316


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +3

Query: 6    PQQMIAGLGTTAAWRP*S*EETRRSPPWRW*PGVKGSS 119
            P Q    + TT +W P S        P  W P +  +S
Sbjct: 1345 PAQSTTSVSTTTSWNPGSTTNYPEWQPTEWHPPIPPTS 1382


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 508 PPPAPQS-RTSTGTTPVVHPGHSP 576
           PPPAPQS  T   ++ +  P  +P
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAP 34


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription
          factor homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 48 ARPPSSPNQQ 19
          A PP SPNQQ
Sbjct: 33 ATPPQSPNQQ 42


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 511 PPAPQSRTSTGTTPVVHPGHSPSG 582
           P    S +  G  PV  P HSP G
Sbjct: 179 PLISSSSSPPGVFPVDAPMHSPPG 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,952
Number of Sequences: 336
Number of extensions: 3964
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)