Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0580
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc...    27   1.9  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   3.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   4.5  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   7.8  

>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
           Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
 Frame = +1

Query: 280 WG-SPRSDAR--GR-LLERWAHAAGLCLLNRGS--VXTCVRWQGESIVDVTFASPAIARR 441
           WG SPR      G+ + E + HA GL L  R    V     W  +  V   F++P    R
Sbjct: 222 WGISPRGAGYTFGQDISETFNHANGLSLTARAHQLVMEGFNWAHDGDVVTIFSAPNYCYR 281

Query: 442 IRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTP 552
             +   +   +   +  +++FDP P          TP
Sbjct: 282 CGNQAAILEVDDTMNQVFLQFDPAPREGEPVIARRTP 318


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 501 PNISVI*QRLRPXQNSPVADTACDGRACERNVHNRLALPPHARRNRTSIQQTEA 340
           PN  +  +     Q SP+  TA  G +CE + H     P  A     S+   EA
Sbjct: 299 PNPQLTPEMFDVKQGSPIPPTAYSGSSCETSQHTIANTPFLAYDRSPSLTNQEA 352


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 571 NDRDAPRGWSPW-TSATAERAEDQTEY 494
           ND+D+P   SPW  S +++R+  Q E+
Sbjct: 90  NDKDSPVNQSPWKRSDSSKRSSSQDEF 116


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -2

Query: 323 LSSSLPRASERGEPHATDFALRSPRESLDEERGGEQSPRSRPGNARTRR 177
           LSS L   S R      D+    PR        G + PR   G+ R RR
Sbjct: 3   LSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRR 51


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/111 (18%), Positives = 42/111 (37%)
 Frame = -2

Query: 545 VPVDVRDCGAGGGSNRIYR*SDSVSAPSKTLQSRIRRAMAGLANVTSTIDSPCHRTHVXT 366
           +P +  +  A GG+   +   ++V+AP++T     +        V+    +   +  V  
Sbjct: 427 IPTESENPVAVGGTTAEHPVQEAVTAPTETAHDFSKETTTASKRVSKHDKASAEKHKVAR 486

Query: 365 EPLFNKQRPAACAHLSSSLPRASERGEPHATDFALRSPRESLDEERGGEQS 213
           +P    Q P   +  + S   +     P     A  SP  +     GG++S
Sbjct: 487 KPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGGKKS 537


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 135 PSSCTATNP*PLVTIARGGIAASLLMTMAARPPSSP 28
           PS    +NP     +A   +AA+  +T    PP  P
Sbjct: 261 PSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVP 296


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 30/115 (26%), Positives = 47/115 (40%)
 Frame = -2

Query: 521 GAGGGSNRIYR*SDSVSAPSKTLQSRIRRAMAGLANVTSTIDSPCHRTHVXTEPLFNKQR 342
           GA GG+N     + S  A S +       + +G++  T  + SP        EP  N Q 
Sbjct: 9   GAQGGNNNALEKTSSNEATSSSSTQVSSLSASGISVSTPRV-SPF-------EPERNMQV 60

Query: 341 PAACAHLSSSLPRASERGEPHATDFALRSPRESLDEERGGEQSPRSRPGNARTRR 177
            ++  HL +++         +AT  A   P+ES  E    E  P+      R+RR
Sbjct: 61  QSS-QHLEANVQSPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRSRR 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,405
Number of Sequences: 5004
Number of extensions: 58439
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)