Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0580
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8) 32 0.51
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7) 30 2.1
SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37) 30 2.1
SB_8704| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_14604| Best HMM Match : PT (HMM E-Value=5.1) 29 3.6
SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 29 4.8
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 29 4.8
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 29 4.8
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 29 4.8
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.8
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 29 4.8
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 29 4.8
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 29 4.8
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_45940| Best HMM Match : Vicilin_N (HMM E-Value=5.1) 28 6.3
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 28 8.3
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 8.3
SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016) 28 8.3
SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4) 28 8.3
>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
Length = 336
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 508 PPPAPQSRTSTGTTPVVHP 564
PPP P S T TGTTP V P
Sbjct: 233 PPPLPTSATPTGTTPSVSP 251
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -3
Query: 367 PNLYSTNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMP 188
P ST +G P +P A E P G P + + T+ E A + P+ A++
Sbjct: 1182 PGDQSTEQGNPEVVETPPATAEEPQQGLPAPASQEDSQAQPTETKPEGAEDNPENAEKPG 1241
Query: 187 EL 182
E+
Sbjct: 1242 EV 1243
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 31.5 bits (68), Expect = 0.67
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = -3
Query: 265 H*GPRENHWTRSEAASNRPDPAQEMPELDGRPIRREVRPDH-DG-----PFQLHRDEPLT 104
H P E H S + + PE + R P H DG PF +HR+ P T
Sbjct: 1060 HGTPPEGHHKHRHRGSPASEQHGDRPERPPEELSRMYLPPHPDGAALMHPFLIHRESPFT 1119
Query: 103 PGHHRQGGDRRV 68
HH GDR+V
Sbjct: 1120 -AHHL--GDRQV 1128
>SB_9164| Best HMM Match : COX2_TM (HMM E-Value=3.7)
Length = 543
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 355 STNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRE-NHWTRSEAASNRPDPA 200
+T R PT+ +YH RPSG + M + G E ++R + +++P PA
Sbjct: 315 TTERITENQPTAG-SYHMRPSGQTTMMEEDVMGSEEIKEFSRPKQTTSKPSPA 366
>SB_16652| Best HMM Match : I-set (HMM E-Value=1.2e-37)
Length = 552
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 192 CPNSTVGLFGEKYAPITTVPSSCTATNP*PLVTIARGGIAASLLMTMAARPP 37
C S G+ + + TV T T+P VT+ARG AASL + PP
Sbjct: 152 CVASNTAGTGDNSSVVITVQDPPTITHPPSDVTVARGS-AASLSCNASGTPP 202
>SB_8704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -3
Query: 358 YSTNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMPELD 179
++ N G P ++ H + +G Q+T R+ HW SE A P+ +
Sbjct: 30 HAKNTGSPSTQRPLISEHAKTTGSPSTQRTLDLRARKEHWI-SEHAKTTGSPSTQ----- 83
Query: 178 GRPIRREVRPDH 143
RP+ R DH
Sbjct: 84 -RPLDLRAREDH 94
>SB_14604| Best HMM Match : PT (HMM E-Value=5.1)
Length = 344
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/98 (20%), Positives = 35/98 (35%)
Frame = -3
Query: 367 PNLYSTNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMP 188
P+ ++ +P P+ Y G P GP N ++ +P P+
Sbjct: 207 PSHNPRDQQKPSGPSQNPRYQATTLGTKPQPS----GPSHNPRDQATTLGTKPQPSGPSH 262
Query: 187 ELDGRPIRREVRPDHDGPFQLHRDEPLTPGHHRQGGDR 74
+ +P GP RD+ T G ++ GD+
Sbjct: 263 NPGDQATTLGTKPKPSGPSHNPRDQATTLGTNKNPGDQ 300
>SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 307
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 156 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 215
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 216 IHPLLPHISDHCHITYN 232
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 226 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYAISSNRVRQKFQFLK 285
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 286 IHPLLPHISDHCHITYN 302
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 207 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 266
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 267 IHPLLPHISDHCHITYN 283
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 412 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 471
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 472 IHPLLPHISDHCHITYN 488
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 63 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 122
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 123 IHPLLPHISDHCHITYN 139
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 977 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVQQKFQFLK 1036
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 1037 IHPLLPHISDHCHITYN 1053
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 207 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 266
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 267 IHPLLPHISDHCHITYN 283
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 552 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVQQKFQFLK 611
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 612 IHPLLPHISDHCHITYN 628
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 680 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 739
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 740 IHPLLPHISDHCHITYN 756
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 798 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 857
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 858 IHPLLPHISDHCHITYN 874
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D+RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 333 TDSRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 392
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 393 IHPLLPHISDHCHITYN 409
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -3
Query: 259 GPRENHWTRSEAASNRPDPAQEMPELDGRPIRREVRPDHDGPFQLHRDEPLTPGHHRQGG 80
G E H S N+ A+ P ++ R E D + P + H D P PGHH G
Sbjct: 197 GDDERHSPISRTTPNKSPVARRPPVVE----RAE---DWESPRRRHLDWPPRPGHHSMGS 249
Query: 79 D 77
+
Sbjct: 250 N 250
>SB_2931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 208 DPAQEMPELDGRPIRREVRPDHDGPFQLHRDEPLTPGHH 92
DP+ E P ++G ++R++ PDH+ +L HH
Sbjct: 19 DPSGE-PAIEGNSLKRKLEPDHETDNELKSPPAKILAHH 56
>SB_45940| Best HMM Match : Vicilin_N (HMM E-Value=5.1)
Length = 454
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 310 YHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMPELDGR 173
YH+ G +P+ + R N + R++ RP+P + + GR
Sbjct: 342 YHKEKEGSNPLLACTQGKGRSNPYWRAQQGKGRPNPYWRVQQGKGR 387
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +2
Query: 161 SPNRPTVEFGHFLGGIGAIARRLAPRPVILAGTSMRSLLHGAPPARTLVVGYWRGG 328
+PN + G F GA L PR + + R LL A + G W GG
Sbjct: 252 TPNNEDKDVG-FRATAGADPETLPPRASVSSPVEFRPLLPPAASTHPAIYGSWLGG 306
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 338 AACAHLSSSLPRASERGEPHATDFALRSPRESLDEERGGEQSPRSRP 198
A+ +H PR S G+ + +RSPRE EE QSP P
Sbjct: 361 ASASHPLGPRPRMSSFGK-YNKKARVRSPREETGEECVSPQSPSKHP 406
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +1
Query: 295 SDARGRLLERWAHAAGLCLLNRGSVX------TCVRWQGESIVDVTFASPAIARRIRDWR 456
+D RGR L + L + N + TC ++ G S+VD +S + ++ + +
Sbjct: 207 TDRRGRSLIELCSESNLRIANGRIIGDLTGKKTCYQYNGTSLVDYVISSNRVRQKFQFLK 266
Query: 457 VLXGAETLSDHRYIRFD 507
+ +SDH +I ++
Sbjct: 267 IHPLLPHISDHCHITYN 283
>SB_15424| Best HMM Match : PAN (HMM E-Value=0.00016)
Length = 702
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 341 PAACAHLSSSLPRASERGEPHATDFALRSPRESLDEERGGEQSPRSRP 198
P + H SS RA + EPH+ +R+P+ L + ++P+S P
Sbjct: 453 PQSEPHSQSSTVRAPQ-SEPHSQSPTVRAPQSELHSQSPTLRAPQSDP 499
>SB_43341| Best HMM Match : N_methyl (HMM E-Value=6.4)
Length = 247
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 150 PITTVPSSCTATNP*PLVTIARGGIAASLLMTMAARPPSSPNQQSFAGG 4
P+ P S N V IA+GG LL +P ++P Q GG
Sbjct: 159 PVPDTPRSRIRDNDTDFVKIAKGGGHKDLLAITDHKPTATPKQYKKNGG 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,104,089
Number of Sequences: 59808
Number of extensions: 552514
Number of successful extensions: 2024
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2018
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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