Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0580
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z77660-7|CAB01174.1|  318|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    28   5.5  
U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   9.7  

>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 484 DHRYIRFDPPPAPQSRTST---GTTPVVHPGHSPSG 582
           DH Y  ++PPPA ++ T+T    T  + +  HSP G
Sbjct: 712 DHGYNAYEPPPASRTTTTTIVASTQDISNNVHSPHG 747


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical protein
            H05G16.1 protein.
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 496  IRFDPPPAPQSRTSTGTTPVV 558
            +RFD PP+P S T+ G+TP +
Sbjct: 949  VRFDLPPSPCSPTAGGSTPFI 969


>AF025458-2|AAB70978.1|  557|Caenorhabditis elegans Hypothetical
           protein C01B12.5 protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 376 CVRWQGESIVDV-TFASPAIARRIRDWRVLXGAETLSDHRYIRFDPPPAPQSR 531
           CVR+   + V V    SPAI RR    + L GA  L++     FD   +PQS+
Sbjct: 128 CVRYMIVAQVMVFRDVSPAIRRRFPTIKHLIGAGLLTEDELTEFDAITSPQSK 180


>Z77660-7|CAB01174.1|  318|Caenorhabditis elegans Hypothetical
           protein F38H4.9 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
 Frame = +1

Query: 280 WG-SPRSDAR--GR-LLERWAHAAGLCLLNRGS--VXTCVRWQGESIVDVTFASPAIARR 441
           WG SPR      G+ + E + H+ GL L++R    V     W  +  V   F++P    R
Sbjct: 218 WGISPRGAGYTFGQDISETFNHSNGLTLISRAHQLVMEGYNWSHDRNVVTVFSAPNYCYR 277

Query: 442 IRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTP 552
             +   +   +    + +++FDP P       T  TP
Sbjct: 278 CGNQAAMVELDDDLKYSFLQFDPAPRRGEPHVTRRTP 314


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
           protein F47B8.13 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 508 PPPAPQSRTSTGTTPVVHPGHSPSGH*SA*IRRPDGSLYGGGVGAHASTPSSRSREK 678
           P PAP+   +    PV  P  +PS   +      DG+ Y  G  A A   S  ++++
Sbjct: 111 PAPAPEPEAAPAPAPVAEPALAPSPDAAP---AADGASYSAGAAAPAGGASYPAKKR 164


>U23484-7|ABB88232.1|  738|Caenorhabditis elegans Hypothetical
           protein EEED8.10a protein.
          Length = 738

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 365 EPLFNKQRPAACAHLSSSLPRA 300
           E +FNKQRP   +HL + L RA
Sbjct: 291 ETVFNKQRPMRTSHLKAILTRA 312


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 508 PPPAPQSR-TSTGTTPVVHPGH-SPSGH 585
           PPP PQ   T  G  P  H GH  P GH
Sbjct: 100 PPPPPQGADTWRGAPPPAHHGHFGPPGH 127


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -2

Query: 695 VPEPPGFSLDLELGVDAWAPTPPP*RLPSGRLIQALQCPLGE*PGCTTGV 546
           +P  PG   D++  V  W     P  LP+     + Q P     GCT GV
Sbjct: 308 MPCAPGTVFDVQSQVCVWDTNSQPGTLPTPAPYVSTQAPQNAQCGCTGGV 357


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -3

Query: 355  STNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMPELDG 176
            S +  RPR   SP  Y E P   S  +  +   P+++++   E A     P    P+L  
Sbjct: 844  SYDENRPRG--SPFVYEE-PESESESEPEAEPEPKKDNFAEPEPARGDISPLIGFPQLSP 900

Query: 175  RPIRREVRPDHDGPFQLHRDEPLTP 101
             P     R + +  F   +DE  +P
Sbjct: 901  IPSPSRYRNESESTFD-WKDEDESP 924


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = -3

Query: 355  STNRGRPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMPELDG 176
            S +  RPR   SP  Y E P   S  +  +   P+++++   E A     P    P+L  
Sbjct: 830  SYDENRPRG--SPFVYEE-PESESESEPEAEPEPKKDNFAEPEPARGDISPLIGFPQLSP 886

Query: 175  RPIRREVRPDHDGPFQLHRDEPLTP 101
             P     R + +  F   +DE  +P
Sbjct: 887  IPSPSRYRNESESTFD-WKDEDESP 910


>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +1

Query: 508 PPPAPQSRTSTGT---TPVVHPGHS 573
           PPP PQ  T+ GT   TP V+P +S
Sbjct: 446 PPPLPQVNTTQGTSSETPPVNPSYS 470


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 340 RPRAPTSPVAYHERPSGGSPMQQTSH*GPRENHWTRSEAASNRPDPAQEMPELDGRPIRR 161
           R R+P+SP+A+ +     SP+Q  S+  P  +    S A+ ++P P++  P      +R 
Sbjct: 292 RDRSPSSPMAHLDNIQPPSPIQVVSN--PTLSSELSSRASRDQPGPSR--PRSQSANVRE 347

Query: 160 EVRP 149
              P
Sbjct: 348 TYAP 351


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 574 GNDRDAPRGWSPWTSATAER 515
           G   +AP GW PW    A R
Sbjct: 689 GGGGEAPNGWKPWAKGGARR 708


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -2

Query: 524 CGAGGGSNRIYR*SDSVSAPSKTLQSRIRRAMAGLANVTSTIDSPCHRTHVXTEPLFNKQ 345
           CGAGGGSN     +   +    TLQ  +   ++    +    +SPC   H       ++ 
Sbjct: 631 CGAGGGSNSK---ASGDTGDCVTLQVHLIENLSLRMLIGQMGESPCFTEH------DDEL 681

Query: 344 RPAACAHLSSSLPRASERG 288
           RP++C+ +S +     +RG
Sbjct: 682 RPSSCSKISHNYVYDGKRG 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,192
Number of Sequences: 27780
Number of extensions: 392949
Number of successful extensions: 1416
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)