Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0580
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 34 0.078
At1g69960.1 68414.m08051 serine/threonine protein phosphatase PP... 31 0.55
At3g61690.1 68416.m06913 expressed protein 31 0.96
At3g59010.1 68416.m06577 pectinesterase family protein contains ... 30 1.3
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 30 1.7
At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family... 30 1.7
At1g59830.1 68414.m06736 serine/threonine protein phosphatase PP... 29 2.2
At1g18160.1 68414.m02256 protein kinase family protein contains ... 29 2.2
At5g57710.1 68418.m07214 heat shock protein-related contains sim... 29 2.9
At2g16440.1 68415.m01883 DNA replication licensing factor, putat... 29 2.9
At1g66600.1 68414.m07568 WRKY family transcription factor contai... 29 2.9
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 29 3.9
At1g64890.1 68414.m07356 integral membrane transporter family pr... 29 3.9
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 5.1
At1g20180.1 68414.m02522 hypothetical protein similar to At14a (... 28 5.1
At1g14840.1 68414.m01775 expressed protein 28 5.1
At5g02370.1 68418.m00160 kinesin motor protein-related kinesin, ... 28 6.8
At1g10430.1 68414.m01175 serine/threonine protein phosphatase PP... 28 6.8
At5g46810.1 68418.m05767 expressed protein contains similarity t... 27 9.0
At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6) al... 27 9.0
At3g18830.1 68416.m02391 mannitol transporter, putative similar ... 27 9.0
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 27 9.0
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family... 27 9.0
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 34.3 bits (75), Expect = 0.078
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = -3
Query: 340 RPRAPTSPVAYHER-PSGGSPMQQT-SH*GPRENHWTRSEAASNRPDPAQEMPELDGRPI 167
+PR P P + R P G M H GP + + ++ P Q MP G
Sbjct: 404 QPRGPGGPPQWGSRGPHGPHSMPYNYHHGGPYPSQGSHFRPPNSGGYPPQHMPPRSGYGS 463
Query: 166 RREVRPDHDGPFQLH-RDEPLTPG 98
E RP H GP+ + R PG
Sbjct: 464 GWEQRPPHSGPYDYYGRQGGQNPG 487
>At1g69960.1 68414.m08051 serine/threonine protein phosphatase
PP2A-5 catalytic subunit (PP2A5) identical to
SP|O04951|P2A5_ARATH Serine/threonine protein
phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16)
{Arabidopsis thaliana}; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 307
Score = 31.5 bits (68), Expect = 0.55
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = +1
Query: 280 WG-SPRSDAR--GR-LLERWAHAAGLCLLNRGS--VXTCVRWQGESIVDVTFASPAIARR 441
WG SPR G+ + ++ H GL L++R V W E V F++P R
Sbjct: 207 WGISPRGAGYTFGQDIATQFNHTNGLSLISRAHQLVMEGFNWCQEKNVVTVFSAPNYCYR 266
Query: 442 IRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTP 552
+ + D +++FDP P +T TP
Sbjct: 267 CGNMAAILEIGENMDQNFLQFDPAPRQVEPETTRKTP 303
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 30.7 bits (66), Expect = 0.96
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = -3
Query: 274 QTSH*GPRENHWTRSEAASNRPDPAQEMPELDGRPIRREVRPD-HDGPFQLHRDEPLTPG 98
+T H RE +W + D +PI R+ R D H G H +
Sbjct: 1133 RTDHHSDREGNWNAGSKTRGSGRNHNNRNQADNKPISRQDRSDRHWGSSYRHESSSYSAH 1192
Query: 97 HHRQGGDRRVSSYD 56
H + G R +S D
Sbjct: 1193 HSQNGPIRSNTSQD 1206
>At3g59010.1 68416.m06577 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 529
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 556 PRGWSPWTSATAERAEDQTEYIGDLTASPPXPKLSSRGYGVRWPG 422
P GWSPW+S A + T Y G+ S P +S R V W G
Sbjct: 455 PSGWSPWSSNFALK----TLYYGEFGNSGPGSSVSGR---VSWAG 492
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 556 PRGWSPWTSATAERAEDQTEYIGDLTASPPXPKLSSRGYGVRWPGL 419
P+GW PWT TA EY+ S P +R V+W GL
Sbjct: 491 PKGWLPWTGDTAPDTIFYAEYLN----SGPGASTKNR---VKWQGL 529
>At1g11070.1 68414.m01268 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 554
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -1
Query: 189 PNSTVGLFGEKYAPITTVPSSCTATNP*PLVTIARGGIAASLLMT--MAARPPSSP 28
P T+ E YAP+ P P PL R G+AA L AA PP P
Sbjct: 209 PPLTMSAEKESYAPLPPPPGRAALPPPPPLPMAVRKGVAAPPLPPPGTAALPPPPP 264
>At1g59830.1 68414.m06736 serine/threonine protein phosphatase
PP2A-2 catalytic subunit (PP2A2) identical to SP|Q07099
Serine/threonine protein phosphatase PP2A-2 catalytic
subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains
Pfam profile PF00149: Ser/Thr protein phosphatase
Length = 306
Score = 29.5 bits (63), Expect = 2.2
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = +1
Query: 280 WG-SPRSDAR--GR-LLERWAHAAGLCLLNRGS--VXTCVRWQGESIVDVTFASPAIARR 441
WG SPR G+ + ++ H GL L++R V W E V F++P R
Sbjct: 206 WGISPRGAGYTFGQDIATQFNHNNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYR 265
Query: 442 IRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTP 552
+ + + +++FDP P +T TP
Sbjct: 266 CGNMAAILEIGEKMEQNFLQFDPAPRQVEPDTTRKTP 302
>At1g18160.1 68414.m02256 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 992
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 530 RDCGAGGGSNRIYR*SDSVSAPSKTLQSRIRRAMAGLANVTSTIDSPCHR 381
RD G G SNR + SD+ +PS +L+S+ +++ + S HR
Sbjct: 19 RDDGEGSVSNRSNKSSDAEPSPSDSLRSQDNSEFKPFLGLSNWLSSVTHR 68
>At5g57710.1 68418.m07214 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 990
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 337 PRAPTSPVAYHERPSGGSPMQQTSH*GPR-ENHWTRSEAASNRPDPAQEMPELDGR 173
P S V + RP GG PM + S+ PR + + + ++ ++ D + + ++ GR
Sbjct: 173 PIPSVSSVGLNFRPGGGGPMTRNSYLNPRLQQNASSVQSGVSKNDDVERVMDILGR 228
>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
similar to SP|P49717 DNA replication licensing factor
MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
protein {Schizosaccharomyces pombe}; contains Pfam
profile PF00493: MCM2/3/5 family
Length = 847
Score = 29.1 bits (62), Expect = 2.9
Identities = 29/95 (30%), Positives = 37/95 (38%)
Frame = +1
Query: 397 SIVDVTFASPAIARRIRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTPVVHPGHSP 576
S ++ T++SPA R R R + + PPP P S+ +TP P P
Sbjct: 23 SPIENTYSSPAALHRRRRGRSSTPTQFAT--------PPPPPSRLASSNSTP---PTSRP 71
Query: 577 SGH*SA*IRRPDGSLYGGGVGAHASTPSSRSREKP 681
S S R G GGG G TP S P
Sbjct: 72 SAARSK-GRNGHGGGGGGGGGGDPGTPMSTDEPLP 105
>At1g66600.1 68414.m07568 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 241
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -2
Query: 425 GLANVTSTIDSPCHRTHVXTEPLFNKQRPAACAHLSS-SLPRASERGEPHATDFALRSPR 249
G AN+ T+ C + V TEPL N + LSS + P E + D A P+
Sbjct: 18 GCANILKTVLDNCKVSSVSTEPLINTILDSFSLALSSVNSPNRQPHHESSSRDMAGLVPQ 77
Query: 248 ES 243
S
Sbjct: 78 RS 79
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/92 (20%), Positives = 38/92 (41%)
Frame = -2
Query: 479 SVSAPSKTLQSRIRRAMAGLANVTSTIDSPCHRTHVXTEPLFNKQRPAACAHLSSSLPRA 300
+V AP+ T+ + L++++ S H+ H+ P K R L +LP
Sbjct: 259 AVIAPTVTVATAAANTELSLSSMSFDQISDGHQDHLAM-PAKKKARTVVSLDLDLNLPAP 317
Query: 299 SERGEPHATDFALRSPRESLDEERGGEQSPRS 204
+ + FA + E +++ + P+S
Sbjct: 318 EDENRVNGFSFASKQNHEQEHQQKKQREEPKS 349
>At1g64890.1 68414.m07356 integral membrane transporter family
protein contains 11 transmembrane domains; contains Pfam
PF03092: BT1 family; contains TIGRFAMS TIGR00788:
folate/biopterin transporter
Length = 442
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 246 FSRGPQCEVCCMGLPPLGRSW 308
F+RG E CC+G+P + SW
Sbjct: 407 FTRGLAIEACCVGIPLILTSW 427
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 238 TRSEAASNRPDPAQEMPELDGRPIRREVRPDHDGPFQLHRDEPLTPGHHR---QGGDRR 71
++SE S RP +E G+ R H+ P + RD P HHR QGG R
Sbjct: 253 SQSEEPS-RPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQGGRDR 310
>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 391
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 335 ACAHLSSSLPRASERGE----PHATDFALRSPRESLD 237
+C+ LSSS P S + H TD+ L P+E+LD
Sbjct: 65 SCSKLSSSSPSPSSSSDLSFHSHFTDYLLDPPQETLD 101
>At1g14840.1 68414.m01775 expressed protein
Length = 604
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 200 GGIGAIARRLAPRPVILAGTSMRSLLHGAPPAR 298
GG ++RR + RP A +LLHG+ P R
Sbjct: 20 GGSKGMSRRRSMRPSFDADNEFMNLLHGSDPVR 52
>At5g02370.1 68418.m00160 kinesin motor protein-related kinesin,
Xenopus laevis, EMBL:XLA249840
Length = 628
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 498 NISVI*QRLRPXQNSPVADTACDGRAC 418
N+ V+ R+RP ++D +CDGR+C
Sbjct: 20 NVRVV-LRVRPFLPREISDESCDGRSC 45
>At1g10430.1 68414.m01175 serine/threonine protein phosphatase
PP2A-1 catalytic subunit (PP2A1) identical to SP|Q07098
Serine/threonine protein phosphatase PP2A-1 catalytic
subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains
Pfam profile PF00149: Ser/Thr protein phosphatase
Length = 306
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = +1
Query: 280 WG-SPRSDAR--GR-LLERWAHAAGLCLLNRGS--VXTCVRWQGESIVDVTFASPAIARR 441
WG SPR G+ + ++ H GL L++R V W + V F++P R
Sbjct: 206 WGISPRGAGYTFGQDIAAQFNHNNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYR 265
Query: 442 IRDWRVLXGAETLSDHRYIRFDPPPAPQSRTSTGTTP 552
+ + + +++FDP P +T TP
Sbjct: 266 CGNMAAILEIGENMEQNFLQFDPAPRQVEPDTTRKTP 302
>At5g46810.1 68418.m05767 expressed protein contains similarity to
carboxyl-terminal proteinase contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 354
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 669 RPRTGCGRMGAHAATVEASIRTPYSGAS 586
+P G G +G HAA ++ TP+ GAS
Sbjct: 90 QPINGFGTVGQHAAVMKKIDATPWRGAS 117
>At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6)
almost identical to dnaJ plastid division protein ARC6
(GI:33436339) [Arabidopsis thaliana];low similarity to
cell division protein Ftn2 [Synechococcus sp. PCC 7942]
GI:16226084; contains Pfam profile PF00226: DnaJ domain
Length = 801
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 340 GLCLLNRGSVXTCVRWQGESIVDVTFASPAI 432
GLC L G V C W G D + +PAI
Sbjct: 409 GLCALLIGKVDECRMWLGLDSEDSQYRNPAI 439
>At3g18830.1 68416.m02391 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 539
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 119 AVQLEGTVVIGAYFSPNRPTVEFGHFLGGIGAIARRLAPRPVILAGTSMRS 271
A+ G +++G SPN + FG F+ GIG + L PV A S S
Sbjct: 111 AIFFAGAILMG--LSPNYAFLMFGRFIAGIG-VGYALMIAPVYTAEVSPAS 158
>At2g48050.1 68415.m06014 expressed protein ; expression supported
by MPSS
Length = 1500
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 256 PRENHWTRSEAASNRPDPAQEMPELDGRPIRREVRP-DHDG--PFQLH 122
PR R ++ PD PE+DG R+E +P D D PF+ H
Sbjct: 800 PRTEGLRRRKSPYLIPDSGAASPEIDGVVHRKEEQPIDEDSQYPFEAH 847
>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965;
Length = 185
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 487 HRYIRFDPPPAPQSRTSTGTTPVVHPGHSPSGH 585
H R PPP P++R +T P P SP H
Sbjct: 83 HNDHRRQPPPLPENRAATAGQP---PSPSPDNH 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,528,964
Number of Sequences: 28952
Number of extensions: 379935
Number of successful extensions: 1402
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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