Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0579
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    30   0.36 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   0.48 
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    29   0.64 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.1  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    27   1.9  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   4.5  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    26   4.5  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   5.9  

>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 21  SNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKK 170
           S   +RK+++G  T+  +  P  + RK   R     + VPNK+   + K+
Sbjct: 131 SEEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKR 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +3

Query: 54   TKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAA 233
            +  ++R+     +S+ R  R  +S    P K     + K++E +T+VS   +    + AA
Sbjct: 846  SNVSHRERSNSVSSKSRETRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAA 905

Query: 234  KS----EAEVSRKLPVEAAGDNEKMK 299
            KS    + E + K PVE   D +  K
Sbjct: 906  KSIKPQKPEPALK-PVEGTADPKSTK 930


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 87  ANSRKRIARAESSPAK-VPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSRKL 263
           A +R+R +  E+SP    P    A        +     PL   PRS R   SE      L
Sbjct: 33  AINRRRSSPVENSPGNGFPVSEDATDYPSGTTSENESLPLNRAPRSLREVASELAQEETL 92

Query: 264 PVEAAGDN 287
           PVE +  N
Sbjct: 93  PVETSDLN 100


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = +3

Query: 18  VSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATI-V 194
           + ++  RKV    +         +N    +++ +  P+       A  +   +  + + V
Sbjct: 77  IGSSTGRKVSGSIQRLASNFKNPSNPHADVSKIDRLPSDSSESHVATPSSPTISNSFVSV 136

Query: 195 SPLKTRPRSTRAAKSEAEVSRKLPVEAAGDNEKMKYDDDRKYKL 326
           SPL  RP+     +   E+S +  V++   N+ MK+DD   +++
Sbjct: 137 SPLLKRPQ-----QKGPEISFQSSVQSTKGNDLMKHDDTNNHQI 175


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 165 KKEVEAATIVSPLKTRPRSTRAAKSEAE--VSRKLPVEAAGDNE 290
           KKEVE    V  ++  P ST +AK EAE   + KL  E   +NE
Sbjct: 17  KKEVEFHKKVDHVENPPLSTESAKLEAEEVAAEKLNSEHLLENE 60


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 154 ACLLFGTFAGDDSARAILLRLFASGT 77
           AC++FG  AG  ++  +L R  AS T
Sbjct: 483 ACVVFGRLAGQGASSTMLRRFIASST 508


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 57  KTANRQIVPEANSRKRIARAES-SPAKVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAA 233
           K +++  V    S+K   RA S  P+K   K+Q    KKE  ++   S   +    + ++
Sbjct: 42  KQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSS 101

Query: 234 KSEAEVS 254
           +SE+  S
Sbjct: 102 ESESSSS 108


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 27  TAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIVSPLK 206
           + ERK +K +K ++ Q + E +  KR  + E   AKV  + +  K +K+ E    +   K
Sbjct: 63  SGERK-RKFSKKSHLQELYERSEEKRRIQQEKEDAKVQKRLEIEKKQKDREQTRNMLSKK 121

Query: 207 TR 212
           T+
Sbjct: 122 TK 123


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 39  KVQKGTKTANRQIVPEANSRKRIARA 116
           KV+KGT  +  Q+  + N ++R+A A
Sbjct: 136 KVKKGTHASESQVNKQLNDKERVAAA 161


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 93  SRKRIARAESSPAKV-PNKRQALKTKKE--VEAATIVSPLKTRPRSTRAAKSEAEVSRKL 263
           S+K  A  + + +KV   K +A K  KE  ++++     ++T   +  AAK + +  +K+
Sbjct: 61  SKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAAAAAKKKKKNKKKV 120

Query: 264 PVEAAGDNEKMKYDDDRKYK 323
             +  GD+   K   +   K
Sbjct: 121 KAKKVGDSSVDKIATEESVK 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,426
Number of Sequences: 5004
Number of extensions: 34383
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)