Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0579
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0188 - 15596062-15597084,15597513-15597791 34 0.12
02_05_0089 - 25715637-25716333,25716481-25717238 31 1.2
03_01_0316 + 2487917-2488003,2488104-2488676 30 1.5
09_04_0505 + 18183203-18183294,18183388-18183436,18183719-181840... 29 2.7
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251... 29 2.7
06_03_1247 - 28676578-28676730,28677019-28677177,28677314-286774... 29 4.7
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 29 4.7
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 28 6.2
07_01_0287 - 2094333-2094542,2094719-2095999 28 6.2
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 6.2
12_02_1023 + 25393555-25393901,25396224-25396368 28 8.1
04_03_0777 - 19492053-19492091,19492356-19492934 28 8.1
03_05_0411 - 23972738-23973606,23977701-23977794,23978487-239785... 28 8.1
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 78 VPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSR 257
+P A +K +A A K+PNK+ A KT K+ AT K + + A K E E ++
Sbjct: 117 MPAAVKQKGLAAAGEFSTKIPNKKFAKKTAKKPSPAT----AKKKEAAAAAVKEEDEPTK 172
Query: 258 KLPVEAAGDN 287
K ++ D+
Sbjct: 173 KPKLKKEEDD 182
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 30.7 bits (66), Expect = 1.2
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Frame = +3
Query: 27 TAERKVQKGTKTANRQIVPEANSRKRIARA-ESSPAKVP-NKRQALKTKKEVEAATIVSP 200
T++R + GT +NR PE N A A E S A V + + + K + + V
Sbjct: 333 TSDRGIDVGTIESNRVPEPEENGATSHADAVEKSDADVSTHNHEDVVEKSDELLESGVDT 392
Query: 201 LKTRPRSTRAAKSE---AEVSRKLPVEAAGDNEKMKYDDDR 314
T + K E A+V + + E AG+ + +DDR
Sbjct: 393 RSTHEDAVGKPKEETEDADVQKTISTEVAGEGKGAPDEDDR 433
>03_01_0316 + 2487917-2488003,2488104-2488676
Length = 219
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 114 AESSPAK--VPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSRKLPVEAAGD 284
A +PA+ V + + L+ ++ V A ++PL +RPR AA ++A R+ A D
Sbjct: 72 APGAPARAAVGPRTKGLRRRRRVTAPWSLAPLLSRPRQAAAAAADAGAPRRRCTHCAVD 130
>09_04_0505 +
18183203-18183294,18183388-18183436,18183719-18184003,
18184914-18185135,18185272-18185421
Length = 265
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +3
Query: 30 AERKVQKGTKTANR----QIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIVS 197
AE+ V G +T R P A S + S PN + + K V+ A +
Sbjct: 2 AEKAVGHGPRTRIRGGGLAAAPTAPSAAARRLSAVSYTAAPNLTKKVPDPKVVKPARKTT 61
Query: 198 PLKTRPRSTRAAKSEAEVSRKLPVEAAGDNEKMKYDDD 311
P+K RP+ +A K E++ L + +G +K+ D+
Sbjct: 62 PVKKRPQVDQAQKQREELA-ALQEQLSGLQKKLLEKDE 98
>03_02_0882 -
12121917-12124446,12124739-12124919,12125057-12125134,
12125731-12125764,12125864-12125975,12126053-12126238,
12126505-12126575
Length = 1063
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Frame = +3
Query: 21 SNTAERKVQKGTKTANRQIVPEANSRKR--IARAESSP-AKVPNKRQALKTKKEVEAATI 191
S T QK + P A SR+R +A + S P +KV Q +K KKE AA+
Sbjct: 667 SLTKATTAQKTKSSPGTVSAPTATSRRRTPVAPSSSQPTSKVERSAQPVKNKKETVAASK 726
Query: 192 VS-------PLKTRPRSTRAAKS 239
+ KT +++R AKS
Sbjct: 727 PAIKGIEEKKTKTATKTSRLAKS 749
>06_03_1247 -
28676578-28676730,28677019-28677177,28677314-28677412,
28677504-28677554,28677712-28678983,28680209-28680412,
28682330-28682439,28684962-28685067
Length = 717
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 27 TAERKVQKGTKTANRQIVPEA-NSRKRIARAESSPAKVPNKRQ 152
TAE+ + T+T++R I A +SR R + + +VPN+R+
Sbjct: 430 TAEQSASQQTRTSSRSIQESADSSRIRRPSTQHARVRVPNERE 472
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 181 ASTSFLVFKACLLFGTFAGDDSARAILLRLFASGTICLFAVLVPFCTFLSAVLDTA 14
+S S L+ CL FG F + + RA + F G + V++ L V+ A
Sbjct: 458 SSGSHLIEDVCLAFGAFGAEHAIRAREVEEFLKGKLVSAPVILEAVRLLKGVVSPA 513
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -3
Query: 184 AASTSFLVFKACLLFGTFAGDDSARAILLRLFASGTICLFAVLVPFCTFLSAVLDTA 14
AAS S L+ L FG F + + RA + F G + +V++ L V+ A
Sbjct: 453 AASGSHLIEDVRLAFGAFGSEHAIRASKVEEFLKGKLVSASVILEAVRLLKGVVSPA 509
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 142 FGTFAGDDSARAILLRLFASGTICLFA 62
F G+D + L + F SG +CLFA
Sbjct: 431 FAALGGEDKYKTKLCKTFTSGGLCLFA 457
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = +3
Query: 15 AVSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIV 194
+VS + + +KG + A +I +++K+ E VP+K +A K KK+ +
Sbjct: 16 SVSVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKV---VPSKEEAKKVKKQPPPKKVE 72
Query: 195 SPLKTRPRSTRAAKSEAEVSRKLPVEAAGDNEKMKYDDD 311
S S + +A+ + + + A K + DD
Sbjct: 73 SSSSEEDSSESEEEVKAQPKKTVQPKKAAQPAKEESSDD 111
>12_02_1023 + 25393555-25393901,25396224-25396368
Length = 163
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Frame = +3
Query: 12 VAVSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPA----KVPNKRQALKTKKEVE 179
V +TAE A R P A + RI +P V NK+ K KK V
Sbjct: 9 VGTFDTAEEAAWAYDAVARRLYGPNARTNFRIPPPPVAPLLPAPAVANKKMDSKRKKPVV 68
Query: 180 AATIVSPLKTRPRSTRAA 233
A +V+P P + A
Sbjct: 69 VAEMVAPAGVEPAAGEMA 86
>04_03_0777 - 19492053-19492091,19492356-19492934
Length = 205
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 120 SSPAKVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSRKLPVEAAGDNE-KM 296
+ PA P+ A K K + EA T ++PL P+S R EA AA + KM
Sbjct: 10 TDPAPAPSPSPA-KRKPDAEA-TDLAPLDPPPKSARPDADEAAAEEAARARAADKGKGKM 67
Query: 297 KYDDD 311
+D+
Sbjct: 68 VVEDE 72
>03_05_0411 -
23972738-23973606,23977701-23977794,23978487-23978549,
23979558-23979630,23980325-23980375,23980491-23980906,
23981066-23981396,23983165-23983223,23983799-23983975
Length = 710
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 96 RKRIARAE-SSPAKVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSRKLPVE 272
RK+I+ E ++P +P+KR+ V V+P R TRA +A R L
Sbjct: 96 RKKISADEVAAPVLLPSKRKERSISSLVVDTPTVTPTGLTGRRTRAVTRKAAALRGLG-P 154
Query: 273 AAGDNEKMKYDDDRKY 320
D K + D+ K+
Sbjct: 155 GIDDPVKKEIDNGEKH 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,477
Number of Sequences: 37544
Number of extensions: 200391
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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