Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0579
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    33   0.18 
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains...    31   0.55 
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    30   1.3  
At3g28770.1 68416.m03591 expressed protein                             30   1.3  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-...    29   2.9  
At4g09290.1 68417.m01537 hypothetical protein                          29   2.9  
At1g07790.1 68414.m00843 histone H2B, putative strong similarity...    29   3.9  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    28   5.1  
At4g25430.1 68417.m03657 hypothetical protein                          28   5.1  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    28   5.1  
At5g54890.1 68418.m06837 expressed protein                             28   6.8  
At3g21560.1 68416.m02719 UDP-glucosyltransferase, putative simil...    27   9.0  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    27   9.0  
At1g08380.1 68414.m00927 expressed protein                             27   9.0  

>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 184 AASTSFLVFKACLLFGTFAGDDSARAILLRLFASGTICLFAVLVPFCTFLSAVL 23
           A+     V K  L FG++ GD S RAI +  F +G +  ++VL      L  ++
Sbjct: 440 ASRKGVTVEKCFLAFGSYGGDHSIRAIEVETFLTGKLLSYSVLYEAVGLLKGII 493


>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 644

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +3

Query: 57  KTANRQIVP---EANSRKRIARAESSPAKVPNKRQALKTKKEVEAATI-VSPLKTRPRST 224
           +T N+++V    E+  R+ +AR  +       +RQ  + K E+E  TI V  +       
Sbjct: 185 RTRNQELVKMQEESAIRREVARRATEEEIQAQRRQTEREKAEIERETIRVKAMAEAEGRA 244

Query: 225 RAAKSEAEVSRKLPVEAA-GDNEK 293
           R +K   +V+R++ V+ A  + EK
Sbjct: 245 RESKLSEDVNRRMLVDRANAEREK 268


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 132 KVPNKRQALKTKKEVEAATIVSPLKTRPRSTRAAKSEAEVSRKLP 266
           KV +KR+ LKT  +  +  + SP+  R RS+ ++ S ++    LP
Sbjct: 195 KVRSKRELLKTLGDDNSDVLPSPIPWRSRSSSSSSSSSKEVESLP 239


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
 Frame = +3

Query: 15   AVSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIV 194
            + S   E+K  +  K+  ++   EA   K+ ++ +    K   +R   K+KKE E +  +
Sbjct: 1005 SASKNREKKEYEEKKSKTKE---EAKKEKKKSQDKKREEKDSEER---KSKKEKEESRDL 1058

Query: 195  SPLKTRPRSTRAAKSEAEVSRKLPVEAAG-DNEKMKYDDDRKYK 323
               K    +    +SE   S+K   +    DN+ MK ++D+K K
Sbjct: 1059 KAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEK 1102


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
 Frame = +3

Query: 24  NTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVE---AATIV 194
           N A   + +    A    V  ++SR  +  + SSPA  P +  +L  ++ +      +++
Sbjct: 368 NVAHGHISRNASGARH--VASSSSRTSVQPSPSSPALTPYQNNSLHNQRRLSENFRRSLL 425

Query: 195 SPLKTRPRSTRAAKSEAEVSRKLPVEAAGDN 287
           S L T+ R+ R+    A  +  + +++ GDN
Sbjct: 426 SSLVTQQRAARSLAHPASPNEHV-LQSGGDN 455


>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 916

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +3

Query: 9   GVAVSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAAT 188
           G  V N        G +   +    + +S K+ A+  +SP  V  K+ ++K + + +   
Sbjct: 210 GSTVKNEVPNGKVLGKRPLEKNSSADQSSLKK-AKISASPTSVKMKQDSVKKEIDDKGRV 268

Query: 189 IVSP-LKTRPRSTRAAKSEAEVSRKLPV 269
           +VSP +K +  STR   ++ +    +P+
Sbjct: 269 LVSPKMKAKQLSTREDGTDDDDDDDVPI 296


>At4g09290.1 68417.m01537 hypothetical protein
          Length = 376

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
 Frame = +3

Query: 57  KTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIVSPLKT--RPRSTRA 230
           K+ + + +    + +RI++A++SP K   K  A + +K   AAT V+P  T  +P+S + 
Sbjct: 245 KSPDSRRLRSMTAARRISKAKTSPKK---KEPAKRGRK---AATKVTPKVTIKKPKSPKE 298

Query: 231 AKSEAE-----VSRKLPVEAAGDNEKMKYDDDR 314
           AK +A+     V +  P EA    EK   +D+R
Sbjct: 299 AKEKADGDTSSVPKTKPEEA---KEKADAEDNR 328


>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
           histone H2B Arabidopsis thaliana GI:2407802, Gossypium
           hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
           Capsicum annuum SP|O49118; contains Pfam profile PF00125
           Core histone H2A/H2B/H3/H4
          Length = 148

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 165 KKEVEAATIVS-PLKTRPRSTRA-AKSEAEVSRKLPVEAAGDNEKMKYDDD-RKYKLYI 332
           KK  E  T    P++    + +A A+ + +  +KLP + AGD +K +   +   YK+YI
Sbjct: 7   KKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVETYKIYI 65


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 93  YLLLELFACSPSWFLSVLFFRQCWIPQLLVP 1
           + L+ L A  P W+LS  F  + W+ Q+ VP
Sbjct: 622 FFLIGLLAPVPFWYLSKKFPEKKWLKQIHVP 652


>At4g25430.1 68417.m03657 hypothetical protein
          Length = 455

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +3

Query: 54  TKTANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAATIV-SPLKTRPRSTRA 230
           +K   + + P +   K  ++++ SP   PN R   + KK+ +   +  S      R  + 
Sbjct: 291 SKENQQSLRPISGWEKAESKSKFSPHPTPNNRNKQRKKKQCKKIYVTSSAFSATERPRKQ 350

Query: 231 AKSEAEVSRKLPVEAAGDNEKMKYD 305
            K   E  RK         +  KY+
Sbjct: 351 MKRAQEPERKADATICSGQKMYKYE 375


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 3   ARGVAVSNTAERKVQKGTKTANRQIVPEANSRKRIARAESSPAKVPNKRQA 155
           ARG   S T+ R     + T    I+PE    K+     +SPA  P +  A
Sbjct: 389 ARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSA 439


>At5g54890.1 68418.m06837 expressed protein
          Length = 358

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 120 SSPAKVPNKRQALKTKKEVEAATIVSPLK 206
           S P K P +++  KTKK+ +++ +V+ LK
Sbjct: 42  SKPTKPPKEKKKQKTKKQDQSSELVNDLK 70


>At3g21560.1 68416.m02719 UDP-glucosyltransferase, putative similar
           to UDP-glucose:sinapate glucosyltransferase GI:9794913
           from [Brassica napus]
          Length = 496

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 63  ANRQIVPEANSRKRIARAESSPAKVPNKRQALKTKKEVEAA 185
           A  ++VP     +R+         +  K+ ALK K+E EAA
Sbjct: 414 AEERLVPREEVAERLREVTKGEKAIELKKNALKWKEEAEAA 454


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 174 VEAATIVSPL-KTRPRSTRAAKSEAEVSRKLPVEAAGDNEKMKYDDDRKYKL 326
           V+AAT   PL K +  S  A KS     + +    AGD EK++ +  R YKL
Sbjct: 651 VKAATF--PLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETARLYKL 700


>At1g08380.1 68414.m00927 expressed protein
          Length = 140

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 86  FWNYLPVRRLGSFLYFSFGSVGYR 15
           FW +L    LG FL  +FG +G++
Sbjct: 110 FWLWLVTWHLGLFLCLTFGQIGFK 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,804
Number of Sequences: 28952
Number of extensions: 170741
Number of successful extensions: 558
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)