Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0578
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    30   0.28 
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    29   0.85 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    29   0.85 
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    28   1.1  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   7.9  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   7.9  
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    25   7.9  

>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 167 LVQMF-KIPLFIIASFVQLDFLYLYCTSYGG 78
           +  MF K PL +IA   +LDF  LY  SYGG
Sbjct: 19  VTDMFCKYPLKLIAPKTKLDFSILYIMSYGG 49


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 375  HIA*ALVFLTNISER------NLISNFNKFTVINCHNYLFNLYVFKHNNNKNKLYFILIR 536
            H+A  L+   NISE+      +L S     TV++ +  L   Y   H N  NK+ +  I+
Sbjct: 792  HLA-KLIKNVNISEKFQKECIDLESQGCLLTVLSNYGLLLTAYTQGHKNLVNKMEYAHIQ 850

Query: 537  YTFFPTYNNITNVLYLQKKGDNPISNVFLY 626
               +P    I   L L  K +  I  V  Y
Sbjct: 851  IGVYPFLPEIVRALLLLDKREQAIDLVKTY 880


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 481 CMYLNIIIIKINCTSF*YDILFFQP---III*PMYFICKKKVTTL 606
           C+++NII +K +C S   DI+ F     ++     FIC   V++L
Sbjct: 128 CVFVNIITLKCHCYSCDADIVIFDKKNLVVRDVQQFICSNLVSSL 172


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 546 FPTYNNITNVLYLQKKGDNPISNVFLYLVN 635
           FP Y  +     LQK GD   SNV+  + N
Sbjct: 115 FPVYKGLEQYTLLQKMGDGAFSNVYKAIHN 144


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -1

Query: 149 IPLFIIA---SFVQLDFLYLYCTSYGGYILPVEFMWLNPK 39
           +PLF+     +F  ++ L L+  +Y  Y LP+E    NPK
Sbjct: 60  VPLFLYPEYWAFKLVELLSLFYCAYVMYFLPLEVGLFNPK 99


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 380 DVALTSEKSMYFALQ--KNTYYD*TFQNPKETESCQINYSR 264
           DVA+    S YF     KNTY+D T  + K  E C  ++ +
Sbjct: 139 DVAINHTISEYFEDDYFKNTYFDKTHIDHKCKEHCSCHHDK 179


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 266 ENSLFGMIRFLWDFEKFSHNMYFFVKRNTSISHSST 373
           E   FG   +LWD+ + SH   FF+  +  +   ST
Sbjct: 332 EEITFGPACWLWDYLRRSHAAGFFLPLSGGLDSCST 367


>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 173 KCLVQMFKIPLFIIASFV 120
           +CL Q +K+P  +I+SFV
Sbjct: 168 ECLQQKYKVPRVVISSFV 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,518
Number of Sequences: 5004
Number of extensions: 60197
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)