Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0578
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 28   6.3  

>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 390 LVFLTNISERNLISNFNKFTVINCHNYLFNLYVFKHNNN 506
           ++   NI+  N+I N N   +IN  N + N+ +  +NNN
Sbjct: 405 IIINNNINNNNIIINNNNIIIIN--NNIININIIINNNN 441


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 423 LISNFNKFTVINCHNYLFNLYVFKHNNNKNKLYFILIRYTF-FPTYNNITNVLYLQKKGD 599
           LI +     VI        L  F+H   KNK YFI I   + F +  +I N+ Y +   +
Sbjct: 90  LIGSVLSLMVIAMERAYAALVPFRHRLLKNKTYFIGIALIWIFASLTSIDNISYSKSTHN 149

Query: 600 NPISN 614
           N + +
Sbjct: 150 NALQH 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,493,586
Number of Sequences: 59808
Number of extensions: 380685
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)