Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0578
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical...    30   1.4  
U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm recep...    28   5.6  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical ...    28   7.4  
U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL132943-12|CAB81978.3|  514|Caenorhabditis elegans Hypothetical
           protein Y116F11B.9a protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 571 MYFICKKKVTTLFLTYSCIWLIFWY 645
           M   C+ + T +FL +   WL FWY
Sbjct: 1   MRIYCQYQTTLIFLLFLAFWLYFWY 25


>U80027-22|AAC48112.1|  336|Caenorhabditis elegans Seven tm receptor
           protein 64 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 209 YCTLFKVIELYNLCEHKVHENSLFGMIRFLWDF--EKFSHN 325
           Y TLFK+ +++   +  V   ++ G I  LW+   E F+HN
Sbjct: 27  YLTLFKIKKMHGTYKRMVITFTVLGTIFSLWEIIAEPFAHN 67


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
 Frame = +3

Query: 444 FTVINCHNYLFNLYVFKHNNNKNK-----------LYFILIRYTFFPTYNNITNVLYLQK 590
           F ++ C + +F  YV+ +  N+ K            ++ ++++T++ T + +  + Y   
Sbjct: 27  FILLGCMSIVFPFYVYVYKTNRPKEEKALLFPIINCFYKIMKFTYWITLSLVLAMYYTVY 86

Query: 591 KGDNPISNVFLYLVNILV 644
           + D P SN+   L+NI V
Sbjct: 87  QLDRPKSNI--PLINIFV 102


>AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.6 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 465 NYLFNLYVFKHNNNKNKLYFILIRYTFFPTYNNITNVLYLQKKGDNPISNVFLYLVNILV 644
           +YL    VF    ++N+++F+ I  +FF  +N ++   Y           +F ++ +ILV
Sbjct: 121 SYLVTWLVFSLTFDRNRIFFLKIFQSFFSCFNKLSLKYY-------TFQLIFTFIGHILV 173

Query: 645 LNG 653
             G
Sbjct: 174 YGG 176


>U56965-2|AAB52667.3|  581|Caenorhabditis elegans Hypothetical
           protein C15H9.5 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 173 KCLVQMFKIPLFIIASFVQLDFLYLYCTSYGGYIL----PVEFMW 51
           K    + K+ LF    F  L  +Y+YCT + G+IL    PV   W
Sbjct: 431 KAAANLEKLRLF--RQFYILVVVYIYCTRFFGFILLHLMPVNLQW 473


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 242 YRVQLP*ITYNTLL*STGDNPS*KCLVQMFKIPLFIIASFVQLDFL 105
           Y  +L  I +N    + G NPS   LV  + IP+  I +F  LD L
Sbjct: 595 YLTKLYDILFNDETFTFGSNPSSPFLVIQYNIPINHIITFTLLDIL 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,625
Number of Sequences: 27780
Number of extensions: 325033
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)