Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0578
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39480.1 68415.m04845 ABC transporter family protein related ...    28   5.2  
At5g19580.1 68418.m02331 glyoxal oxidase-related contains simila...    28   6.8  
At4g23070.1 68417.m03326 rhomboid family protein contains PFAM d...    28   6.8  
At4g17565.1 68417.m02626 F-box family protein contains F-box dom...    27   9.0  
At3g05190.1 68416.m00566 aminotransferase class IV family protei...    27   9.0  

>At2g39480.1 68415.m04845 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1407

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 194  YFIIKYCTLFKVIELYNLCEHKVHENSLF-GM-IRFLWDFEKF 316
            Y ++ +C   KV+ELY L   ++   S F GM I F + F +F
Sbjct: 1028 YTVVAFCAGNKVMELYRLQLQRILRQSFFHGMAIGFAFGFSQF 1070


>At5g19580.1 68418.m02331 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 594

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 441 KFTVINCHNYLFNLYVFKHNNNKNKLY-FILIRYTFFPTYNNITNVLYLQKKGDNPISNV 617
           KF VI   + L   Y+ +   N  KL+  +L+R T  P  NN+   ++L   G     N+
Sbjct: 218 KFFVIGGRDALNYEYIPEEGQNNRKLFDSLLLRQTDDPEENNLYPFVWLNTDG-----NL 272

Query: 618 FLYLVNILVL 647
           F++  N  +L
Sbjct: 273 FIFANNRSIL 282


>At4g23070.1 68417.m03326 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 313

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 191 PYFIIKYCTLFKVIELYNLCEHKVHENSLFGMIRFLWDFEKFSHN 325
           P  +I    +F V+  YN C HK H      + RF   FE F  N
Sbjct: 35  PIVVIANVVVFVVVMYYNDCPHKSHRCLAKFLGRF--SFESFKSN 77


>At4g17565.1 68417.m02626 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 378

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 236 LYNLCEHKVHENSLFGMIRFLWDF 307
           +YN  +HKV++ + +G I ++WDF
Sbjct: 203 IYNHKDHKVYQYASYGFI-YVWDF 225


>At3g05190.1 68416.m00566 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 555

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +3

Query: 390 LVFLTNISERNLISNFNKFTVINCHNYLFNLYVFKHNNNKNKLYFILIRYTFFPTYNNIT 569
           +V +T  + RN  +N +  + I+ +N L N+     +NN N    I++    + +  N T
Sbjct: 391 IVLVTATTRRNSPNNLD--SKIHHNNLLNNILAKIESNNTNAADAIMLDKDGYVSETNAT 448

Query: 570 NVLYLQKKG 596
           N+ ++ KKG
Sbjct: 449 NI-FMVKKG 456


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,740,722
Number of Sequences: 28952
Number of extensions: 270975
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)