Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0577
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    89   5e-19
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   6.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   6.8  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.0  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 38/67 (56%), Positives = 52/67 (77%)
 Frame = +1

Query: 256 INNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHS 435
           I+ +IR+I+T+ DVIHS  +PSLGIK D  P RLNQ +  I+R G+F+GQCSE+CG  HS
Sbjct: 167 IDTRIRLILTSGDVIHSWAVPSLGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHS 226

Query: 436 FIPIVIE 456
            +PIV++
Sbjct: 227 SMPIVVQ 233



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
 Frame = +2

Query: 2   IELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDF-----NN 166
           +E I T+IPA  LI +A                 +T+K+IG Q +  YE +DF       
Sbjct: 77  VEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELNDFVTNENEP 136

Query: 167 IEFDSYIIPSNEIKNNEFRLLDVDNRIILQ*TTKFEL 277
           + FDSY++P  +++    R L+VDNR++L   T+  L
Sbjct: 137 VSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRL 173


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 294 IGCCNYNSNLVVYCKIIRLSTSNSRNSLFFISLDG 190
           +GC    + ++ YC  I+ S S SR  +F   + G
Sbjct: 724 LGCDTCLNAVMEYCDTIKQSASASRRRVFVCEVQG 758


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 231 SNSRNSLFFISLDGIIYESNSILLKSE 151
           + SRN+L+FI LD     SN   + SE
Sbjct: 175 TGSRNTLYFIELDKKTENSNYFEISSE 201


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 242 DYLHLIVGIHYFLFHWMGLY 183
           D+  L++GIH F +H   LY
Sbjct: 398 DFWSLVIGIHVFGYHVYWLY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,182
Number of Sequences: 5004
Number of extensions: 33541
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)