Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0577
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       114   5e-26
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       114   5e-26
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        79   2e-15
SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  114 bits (274), Expect = 5e-26
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = +1

Query: 256 INNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHS 435
           IN  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHS
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHS 215

Query: 436 FIPIVIE 456
           F+PIVIE
Sbjct: 216 FMPIVIE 222



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   IELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEF 175
           +E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EF
Sbjct: 69  LEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEF 128

Query: 176 DSYIIPSNEIKNNEFRLLDVDNRIIL 253
           DSY++P+ ++   +FRLL+VDNR+++
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVV 154


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  114 bits (274), Expect = 5e-26
 Identities = 48/67 (71%), Positives = 58/67 (86%)
 Frame = +1

Query: 256 INNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHS 435
           IN  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQCSEICGANHS
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHS 215

Query: 436 FIPIVIE 456
           F+PIVIE
Sbjct: 216 FMPIVIE 222



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   IELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEF 175
           +E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EF
Sbjct: 69  LEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEF 128

Query: 176 DSYIIPSNEIKNNEFRLLDVDNRIIL 253
           DSY++P+ ++   +FRLL+VDNR+++
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVV 154


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   IELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEF 175
           +E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EF
Sbjct: 69  LEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEF 128

Query: 176 DSYIIPSNEIKNNEFRLLDVDNRIIL 253
           DSY++P+ ++   +FRLL+VDNR+++
Sbjct: 129 DSYMVPTTDLNQGDFRLLEVDNRLVV 154



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +1

Query: 256 INNQIRIIITATDVIHS*TIPSLGIKVDANPGRLNQTNFFINRPGIF 396
           IN  +R++ITA DVIHS  +P+L +K+DA PGRLNQT FFI +   F
Sbjct: 156 INTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


>SB_31570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 245 YDYLHLIVGIHYFLFHWMGLYMSQIQYY*NLNIHIFS 135
           YD +H    IHY   H+  ++   IQYY   NIH ++
Sbjct: 31  YDNIHYD-NIHYDNIHYDNIHYDNIQYY---NIHYYN 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,464
Number of Sequences: 59808
Number of extensions: 196345
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)