Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0576
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024502-8|AAY43996.1|  297|Caenorhabditis elegans Hypothetical ...    28   4.9  
AC024202-4|AAF36036.1|  406|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF024502-8|AAY43996.1|  297|Caenorhabditis elegans Hypothetical
           protein M151.8 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 541 QSQAIS*CFRITFLVNIILNHAEFFEIRNH 452
           Q ++I+  + +   +NI+  H+E FEI NH
Sbjct: 128 QGRSIAEVYELVKQINIVTLHSELFEIPNH 157


>AC024202-4|AAF36036.1|  406|Caenorhabditis elegans Hypothetical
           protein Y71H2B.7 protein.
          Length = 406

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 63  ENYKVLKNIIVHRSKEIIEQNNE 131
           ENY  LK+ I  R KEI+++NN+
Sbjct: 345 ENYDHLKDAIRSRFKEILKENND 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,778
Number of Sequences: 27780
Number of extensions: 155496
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)