Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0575
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    26   0.23 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 144 PSPSSNGTNSYTPAGQNLASGPSYTPRLVLTGTVS 40
           PSPSS  T S  P  +   S P+Y+ R V+T   S
Sbjct: 75  PSPSS--TPSSLPTQRTSTSNPTYSSRSVMTSCSS 107


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/46 (19%), Positives = 24/46 (52%)
 Frame = +2

Query: 119 FVPLEEGDGQRLQINAQNCIHCKTCDIKDPSQNINWVVPEGGGGPA 256
           F+ ++E +   L    ++ +   TC  ++P  +++ +V +   GP+
Sbjct: 625 FLKVKENEITLLVATVRHVMAPSTCQPQNPDNDVHSIVDDSDVGPS 670


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 65  LGVYDGPEARFCPAGVYEFV----PLEEGDGQRLQINAQNCIHCKTCDIKDP 208
           + + + PE R    G+YE++    P    + Q  Q + ++ +    C +K P
Sbjct: 94  MAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFVKVP 145


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 385 NSLQLKRHVLLENSSKIFNSEE 450
           +S QLK HVL+  + K F  ++
Sbjct: 230 DSNQLKAHVLIHTNEKPFECDK 251


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 116 RIHLQDKTWLRVHR 75
           ++HLQD T   +HR
Sbjct: 70  KVHLQDNTIEMIHR 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,502
Number of Sequences: 336
Number of extensions: 2842
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)